KEGG   Beutenbergia cavernae: Bcav_0272Help
Entry
Bcav_0272         CDS       T00893                                 

Definition
(GenBank) DNA ligase I, ATP-dependent Dnl1
  KO
K10747  
DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
bcv  Beutenbergia cavernae
Pathway
DNA replication
Base excision repair
Nucleotide excision repair
Mismatch repair
Brite
KEGG Orthology (KO) [BR:bcv00001]
 Genetic Information Processing
  Replication and repair
   03030 DNA replication
    Bcav_0272
   03410 Base excision repair
    Bcav_0272
   03420 Nucleotide excision repair
    Bcav_0272
   03430 Mismatch repair
    Bcav_0272
Enzymes [BR:bcv01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     Bcav_0272
    6.5.1.6  DNA ligase (ATP or NAD+)
     Bcav_0272
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     Bcav_0272
DNA replication proteins [BR:bcv03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    Bcav_0272
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     Bcav_0272
DNA repair and recombination proteins [BR:bcv03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     Bcav_0272
   NER (nucleotide excision repair)
    Other NER factors
     Bcav_0272
   MMR (mismatch exicision repair)
    Other MMR factors
     Bcav_0272
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif Motif
Other DBs
NCBI-ProteinID: 
UniProt: 
LinkDB All DBs
Position
complement(294279..295817)
Genome map
AA seq 512 aa AA seqDB search
MLLAEVAATSDAVAATRSRLAKRAAIADLLRRAPADDVEIVVAYVAGELRQRRTGLGWRS
LRDLPGPAEDPSLEVADVDATFAAMADLAGPGSATARAAAAAELFAAATEREQALLRGLV
SGELRQGALDALVLDAVADAAGVPAPEVRRAAMFAGATGPVARAALAAAGPAEAVAALSG
FMLTVGRAVRPMLAQSAPDVAAAFAKLPGGDVAVSVDVKLDGIRIQVHKAGDEVRVFTRS
LDDITGRVPEIVEAVRALPAGALVLDGEALAVDAGGRPRPFQETASRSATRDADVAAAMT
LTPFFFDCLHADGRDLVDAPLRERLEVLDAVAGPHVVTRLTTSDPAAAEEFFAAAVRDGQ
EGVVVKATDTPYEAGRRGAGWIKVKPRHTLDLVVLAVEWGSGRRRGWLSNIHLGARDPAG
GFVMLGKTFKGMTDEMLAWQTERFLELETSRDEWAVHLRPEQVVEIAFDGLQRSTRYPGG
LALRFARVLRYRDDKTAAEADTIDTVRTLAGL
NT seq 1539 nt NT seq  +upstreamnt  +downstreamnt
atgcttctcgccgaggtggccgccacgtccgacgccgtcgcggccacccggtcgcgcctc
gccaagcgcgcggcgatcgccgacctgctgcggcgggcgccggcggacgacgtcgagatc
gtcgtcgcgtacgtcgccggcgagctgcggcagcggcgtaccggcctcgggtggaggtcg
ttgcgcgacctcccgggcccggcggaggatccgagcctcgaggtggccgacgtcgacgcc
acgttcgccgcgatggccgacctggccggcccgggctcggccaccgcccgcgccgcagcc
gctgccgagctgttcgcggcggccacggaacgcgagcaggcgctgctgcgggggctggtc
tccggcgagctgcggcagggtgcgctcgacgccctcgtgctcgacgccgtcgccgacgcc
gccggtgtgccggctcccgaggtgcgccgtgcggcgatgttcgccggcgcgaccggcccg
gtcgcccgcgccgctctcgccgccgccggtccggcggaggcggtcgcggcgctgtccggg
ttcatgctcacggtgggccgcgccgtccgcccgatgctcgcacagtccgcacccgacgtc
gccgcggcgttcgcgaagctccccgggggcgacgtcgcggtgtcggtcgacgtcaagctc
gacggcatccggatccaggtgcacaaggcgggcgacgaggtccgcgtgttcacccgcagc
ctcgacgacatcaccggccgcgtcccggagatcgtcgaggccgtccgtgcgctcccggcc
ggcgcgctcgtgctcgacggcgaagcgctcgcggtcgacgccggcggccggccgcgaccg
ttccaggagacggcgtcgcggtccgccacccgtgacgccgacgtcgcggcagccatgacc
ctcacgccgttcttcttcgactgcctgcacgccgacggccgggatctcgtcgacgctccg
ctccgcgagcggctcgaggtgctcgacgccgtcgccggtccccacgtcgtgacccgactg
acgacgtcggacccggcggccgccgaggagttcttcgcggcggcggtccgcgacgggcag
gagggcgtggtggtcaaggccacggacacgccctacgaggcgggccggcgcggcgccggc
tggatcaaggtgaagccacggcacacgctcgacctggtggtgctcgccgtcgagtgggga
tcgggtcggcggcgcgggtggctctcgaacatccacctcggtgcgcgcgatcctgccggc
gggttcgtcatgctcggcaagacgttcaagggcatgacggacgagatgctggcgtggcag
acggagcggttcctcgagctcgagacgtcgcgcgacgagtgggcggtccacctgcgcccc
gagcaggtggtcgagatcgcgttcgacgggctccagcgctccacgcggtaccccggcggt
ctcgcgctccggttcgcgcgggtgctgcggtaccgcgacgacaagacggcggccgaggcc
gacaccatcgacactgtgcgcaccctcgccgggctctga

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