Brachypodium distachyon (stiff brome): 100821444
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Entry
100821444 CDS
T01717
Name
(RefSeq) DNA-directed RNA polymerase I subunit 1
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
bdi
Brachypodium distachyon (stiff brome)
Pathway
bdi03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
bdi00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
100821444
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bdi03021
]
100821444
Enzymes [BR:
bdi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
100821444
Transcription machinery [BR:
bdi03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
100821444
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_1
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-GeneID:
100821444
NCBI-ProteinID:
XP_010238655
UniProt:
A0A0Q3JJ72
LinkDB
All DBs
Position
1:1761246..1776734
Genome browser
AA seq
1634 aa
AA seq
DB search
MEQAPSVEVESILFGFYSEEEIKRVSVTRITKADRLDAKNCPVPGGLLDLAMGPINATDT
CNTCGQLSGLCPGHFGHIELSKPLFNPLLFGTLRDLLRSTCFSCHRFRLHSEQVRRYTRE
LELVARGDVARAKNLQDSGVAEEDVEMDEDSSVDQSSPSDRENKTWTSIQLKEAHAIIFK
LLKKQVKKCANCDMRSPKVTCQIFGWLKIQDTKGSSVRRKAITDFNLEGDSHRHDSSENG
VSGLSDDIIKGSSNQITGLSDDRIKEIPLLATEVESILKDLWENEARFCMLLCDFQQNLS
VSEKRRGYEMFFLKSLLVTPNRFRPSTSSSLGIMEHPQNVLLGKVQEANLAVQHDKAHPN
HMDIITRWRDLQTSVNLFYDSSKGFGNGDGDGNGIRQLLDKKGGVIRQKMMGKRVNHSCR
TVISPDPFLAVNEIGIPPQAALKMTYPENVMPCNAKKLQEAINNGCGIHPGATHYKVNKN
MYKLQDDRSKRRAIAKMLPASRGSISQPGKDPKCEFESKVVYRHLQDGDIVLVNRQPTLH
KPSMMAHFVRVLPGEKTIRMHYANCSTYNADFDGDEMNVHFPQDEISRAEAMNIVDANKQ
YIGPRSGDAVRGLIQDHIVSAVLLTKLDTFISREEYSQLVYGSCVSSTRSPCQSGKRVSV
MKDGDILELLPPAILKPKPLWTGKQVITTILNHLTKGHPPFTVEKKGKIPVKYLIPKERH
GDKDNAKDSEQVLYIHDNELIKGMIDKDQFGNYGIVHTVYELYGAETAGRLLSIFSRLFT
LFLQLHGFTCGIDDLLLFQESDKQRTETLMTSEKCSEEVHRKFTCAGDYDEDPLKLQMEV
EKVVRRIGESATDTLDKMMLSALNGLQSEVNRRLFPYGLQKPFPRNCLTLMTATGAKGGE
VNMTQITSLLGSQDLEGARVPRMISGKSLPCFPPWDTSSRAGGFVSDRFLTGLRPQEYYF
HCMAGRNGLIDTAVKTSRSGYLQRCLVKSLESLFVAYDHTVRNVDGSIVQFRYGEDGVDV
HKSNFLDKFQDKDMFKELADNRKAVLDRLGRYTGDHMSLQSNYITELPEALTDRATKFLS
KDKGRCRHDIKEDELMNLLKAKYLASLVDPGEAVGVILAQSLGEPSTQMTLNTFHFAGRS
DVNVTLGMPRIQEILMKASANIATPVMMCPLLEDVTWDDAERLAAKLRGVRLVDIVEGIE
VCTVPFYNNNGYVSSLYKLQIKLFPPERYPPQSELTVDECQTALRTVFVDSMEFAIEKHL
KLLYRVSGIQETRVKDTESSLSEGPEESEGRPIDGEESGASDGDNENEDDLGTDGEKRKR
QENDEMEYDGEDDVEKEDGMNSDPEEETKYELDNDDDLVESGGESEVNDEGHVSDSSNKV
GKLEGKLAAGKLKKEVNKTVENLEEQKQAQKGVKRTKLSRTVHVESTGLNFEVHYLLLHN
EPHILLSQIAQKTLRSLFVKGSHNNKIDQCKVVWPEKKGDFRGLKTAGVNFDVFWGLQDY
LDICKVASNDIHAILRTYGVEAARATIIKEVKAVFEPFGINVNRRHLSLVAEFMTSGGDY
RAMSSMGMAQFCTSPFGKMTFEQATRFITEAAFYGEADNLNGPSATISLGKPAKTGTGCF
GLLQNFCLEETAVM
NT seq
4905 nt
NT seq
+upstream
nt +downstream
nt
atggagcaagcgccatcagtggaagtggagtcgatcctcttcggcttctacagcgaggag
gagattaagagggtcagcgtcacaaggatcaccaaggcggaccgcctcgatgccaagaac
tgccccgtgccaggcgggttgcttgacctagcgatgggacccatcaacgccactgacacc
tgcaatacttgcggtcagctttccggtctctgccccggccattttggccacattgagctg
tcaaagccgctgtttaatccactgctatttgggacccttcgagatcttctccgctcgacg
tgcttctcttgtcacagattccgcttgcacagcgaacaggttcgtaggtacactcgtgag
cttgaactggtagcaaggggtgacgtcgcccgtgctaaaaatttgcaagattcaggtgta
gcagaggaagatgttgaaatggacgaggacagttcagttgatcaatcatctccttctgac
agagagaataaaacctggacatcgattcagttaaaagaggctcatgctattatcttcaag
ctattgaaaaagcaagtgaaaaagtgtgcaaactgtgacatgaggagtccaaaggtcaca
tgtcagatatttggttggctcaagattcaggatactaaaggttcttctgtaagaagaaaa
gctattaccgattttaatctggaaggagatagtcatagacatgactcaagtgaaaatggt
gtttctggtctttccgatgatataattaaagggtcgagcaatcaaataacaggcctttct
gatgatagaattaaagaaattcctctcttagctacagaggttgaatccattctcaaagac
ttgtgggaaaatgaagccaggttctgcatgttactttgtgactttcagcagaacttaagt
gtatcagaaaagaggaggggctatgagatgtttttcttgaagagtctgcttgtgacacca
aacagattccgtccctcgactagctctagccttggaattatggaacatccacaaaatgtg
ctgttaggtaaagtgcaagaggccaatcttgcggtccagcatgacaaagcccatccgaat
cacatggatatcattacaagatggagagatctgcaaacaagtgtaaatttattttacgat
agtagtaaaggctttggaaatggcgatggggatggtaatggtataaggcaactgttggat
aagaaagggggtgttattcgacagaaaatgatggggaagagagttaatcattcctgccgg
actgttatatctccggatccatttttggctgttaatgaaattgggattcctcctcaagct
gcgttaaaaatgacttatccggagaatgtgatgccctgtaatgccaaaaagctacaagaa
gctataaataatggctgtggaattcatcccggtgcaacacactacaaggttaacaaaaac
atgtataaattacaggatgaccgttccaaacggcgtgccattgctaagatgttacctgct
tctagaggatcaatttctcaacctgggaaagatcctaaatgtgaatttgaaagcaaagtt
gtatatcgacatcttcaagatggtgatattgtacttgtcaacagacagcctactcttcac
aagcccagcatgatggcccattttgttcgtgtattgcctggagagaagacaattcgaatg
cactatgccaattgcagcacatacaatgctgattttgatggtgatgaaatgaatgtgcac
ttcccgcaagatgagatatctcgtgctgaggccatgaacattgttgatgcaaataagcag
tacattggtccaaggagtggggatgctgtcagaggtctcattcaggaccacattgttagt
gctgtgcttctgactaaactggacacattcataagccgtgaggaatacagtcagcttgta
tatgggtcttgtgtgtcctcaactcgtagcccttgtcaatctggtaaaagggtatctgtt
atgaaggatggtgacatattggaacttcttcctccagctattttgaagccaaaaccacta
tggactggaaaacaggtcataacaaccatcttgaaccatttaacaaaaggtcacccgcca
tttactgttgagaagaaagggaaaattccagtaaaatatttaatacctaaagaacgccat
ggtgataaagataacgctaaagattctgaacaagttctgtatattcatgataatgagctt
ataaagggcatgatagataaggaccagttcgggaactacgggatagttcacacggtttat
gaactatatggtgcagagacagctggaagactgctatcaatattcagccgtctgtttaca
ttattcttgcagttacatggatttacttgtggtatagatgatctgctactattccaagaa
tccgataagcagaggacagaaactctcatgacaagtgagaaatgcagtgaagaagtccac
aggaaatttacatgcgctggagattatgacgaagatccattgaaattgcaaatggaggtt
gaaaaggttgtgcggaggattggagaatccgcgaccgacacgttggataaaatgatgtta
agtgctctaaatgggttacaatctgaggtcaatcgacgcttgtttccctatgggctacaa
aagccttttcctagaaattgtctgactcttatgactgcaactggagctaaaggtggcgag
gttaacatgacacaaatcacgtcattgctaggcagccaagatttagaaggagcgcgtgtt
ccacgaatgatatctgggaagtcattaccttgctttccaccttgggatacttcttcaaga
gctggtggttttgtcagtgacagatttttaactggtctgcgccctcaagagtactatttc
cactgtatggccggcagaaatgggttgattgacacagcagtcaagacatcgcgtagtgga
tatcttcagcgttgtcttgtcaaaagtcttgaatcattgtttgtggcttatgatcacact
gtgcgtaatgttgatggatcaattgtacaattccgctacggagaagatggagttgatgtc
cataaaagtaactttctcgataagttccaggataaagacatgtttaaagaacttgctgat
aatagaaaagctgtccttgacaggcttggtagatacactggtgatcacatgtcattgcag
tccaattacatcactgaactgcctgaagcactcactgaccgtgcaacgaaatttctctca
aaagataaggggcgctgccggcatgacatcaaggaggatgaactaatgaatttactaaaa
gccaagtacctggctagtcttgtagatcctggtgaagctgttggtgtgatccttgcccag
tctttaggagaaccctcgacacagatgacgctcaacacttttcattttgctggaagaagt
gacgtgaatgtcacacttgggatgcctcggatacaagaaattctaatgaaagcatcagca
aacattgctacgcctgttatgatgtgtcctctgcttgaagatgtgacttgggatgatgct
gaacgtcttgccgcaaaattgaggggtgttcggttggttgatattgtggagggaatcgaa
gtatgcacagttcctttttacaacaataatgggtatgtttcgagtctctataagttgcag
ataaaactattcccaccagagcgttaccctcctcagtctgagcttacagtagatgagtgt
caaacagccttgagaacagtgtttgttgattcaatggaatttgcaatcgaaaaacaccta
aaattgctatacagagttagtggaatccaggaaactagggtaaaagacactgagagctca
ctatcagaaggtcctgaagaatctgaaggccgacctatcgacggggaagaatctggtgca
agtgatggtgataatgaaaatgaggatgacttgggaactgatggagaaaagaggaaacgt
caagagaatgatgagatggagtatgatggtgaagatgatgttgaaaaggaagatggtatg
aacagtgaccctgaagaagagacaaaatatgaacttgataatgatgatgatctagttgag
tcaggcggagaatcagaagtgaatgacgaaggacatgtgtcagattccagtaacaaggta
ggcaaattagaaggtaagcttgcagctggtaaactcaagaaggaagtaaataaaaccgtg
gaaaacttggaggagcagaagcaggcacaaaaaggagtgaaacgcaccaagttaagccgc
actgtccatgttgaaagcacaggcttaaattttgaggttcactacctcttgttgcacaac
gaaccccatattttgctatcccagattgcccagaagacattgcggtccctatttgtcaag
ggatcccataacaacaaaattgatcaatgtaaagttgtttggccagagaagaaaggtgat
ttccgaggactgaagacggcaggagtgaactttgatgtattctggggtctgcaggactac
ctcgacatctgtaaggttgcgtcgaatgacatacatgcaatcttgaggacatacggggtg
gaggctgccagggccaccatcatcaaggaagtgaaagctgtttttgaaccctttggtata
aatgtaaacagaaggcacctgagcctggttgctgagttcatgacctccggaggtgattac
cgagcaatgagcagcatggggatggcccagttctgtacgtcgccgtttggcaagatgact
tttgagcaagccaccaggttcatcacggaggctgctttttacggcgaggcggacaacctc
aatggcccttcggcgaccatatcgttggggaaaccggctaagacggggacaggttgcttt
ggcttgctgcagaatttttgcttagaggagaccgcggtcatgtaa
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integrated database retrieval system
