Bifidobacterium dentium JCM 1195 = DSM 20436: BBDE_1686
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Entry
BBDE_1686 CDS
T04222
Name
(GenBank) DNA-directed RNA polymerase beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
bdn
Bifidobacterium dentium JCM 1195 = DSM 20436
Pathway
bdn03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
bdn00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
BBDE_1686
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bdn03021
]
BBDE_1686
03400 DNA repair and recombination proteins [BR:
bdn03400
]
BBDE_1686
Enzymes [BR:
bdn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
BBDE_1686
Transcription machinery [BR:
bdn03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
BBDE_1686
DNA repair and recombination proteins [BR:
bdn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
BBDE_1686
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Pentapeptide
Motif
Other DBs
NCBI-ProteinID:
BAQ27680
LinkDB
All DBs
Position
complement(2028812..2032825)
Genome browser
AA seq
1337 aa
AA seq
DB search
MLDVNAFDKLRIGLATADDIRNWSYGEVKKPETINYRTLKPEKDGLFGEQIFGPTRDWEC
ACGKYKRVRFKGIVCERCGVEVTKSRVRRERMGHIELAAPVTHIWFFKGVPSRLGYLLDI
APKDLEKVIYFAAYMVTGVDEEQRHQDLPDLQDEFDTEITNLEKRRNAEIEDRAKKVEAD
LAQLEAEGEAKGSARAKLRNSAEREMAAIRTRFDEQIQRLNAVFDRFKNLKPGDMEGDVD
LWREMEDRYGDYFEGCMGAEAIKKRLQDFDLDAAAKQLREEIDTGTGQRKARALKRLKVV
NAFLTTGNKPEAMVLDVIPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIE
LGAPEIMLNNEKRMLQEAVDSLFDNGRRGRPVTGASNRPLKSLSDMLKGKQGRFRQNLLG
KRVDYSGRSVIVVGPSLRMHQCGLPKPMALELFKPFVIKRLVDLNYAQNMKSAKRLVDRG
DSEVWGVLEEVIAEHPVLLNRAPTLHRLGIQAFEPILVEGKAIHLPPLACAAFNADFDGD
QMAVHLPLSAEAQAEARSLMMASDNILKPADGHTVTMPSQDMILGLYYLTTVIDGAKGQG
RVFSSLEEAEMALDKHEIDMQAKVLIRLPQDFVLPKDWEPSELKVVDPEPGSPDVVKEER
FHDGSVLFATSYGRILFNSTLPLDYPFVNDQAPKKRLSKIVDDIATRYPTAQVAATLDAL
KDMGFTRAPWSGVSFAFSDVIQPPERDEYIEKYEAEADKVNENYEIGMLTEEERRQELID
LWTKCTSEVSEAVEEHFDSKNNLAIIVQSGARGNMMQINQIAGMRGLVANPKGEIIPRPV
KSNYRDGLSVLEYFISQHGARKGLADTALRTAESGYLTRRLVDVSQDVIVREEDCGTKRG
LPMKVGERDENGNLVLVKAADGGPYSRLLASDVIDPADGETVLYKAGDALSMDVLNDLVA
HGVEEVKARSVLTCESKRGVCAKCYGWSLATNKLVDVGEAVGIVAAQSIGEPGTQLTLRS
FHSGGVASASDITQGLPRVTELFEARTPKGEAPIAEFPGVVKVEDTDRGRQVTLKPDDDS
VEPIVYPVTRRAPMLVKDGDHVEAGTQLIEGSVDPKKILRILGPRAAQVNIVEEVHTVYR
SQGVDIHDKHIEVIVHQMLRRITVIDSGDTDLLPGELVDQARFKAANMEAVKNGGKPAAG
RPELMGITKASLATDSWLSAASFQETTRVLTEAALSQKVDDLKGLKENVIIGKLIPAGTG
LARYRNAVVEPDKAIRDTIYPNFGLGGDETGADFGDADLSDVDFSNIDFGDLKLGDDFNP
DDFLDDNGGQMDLGDTL
NT seq
4014 nt
NT seq
+upstream
nt +downstream
nt
gtgctggacgtcaacgcatttgacaaactgaggatcggcctggccaccgccgacgacatc
cgtaactggagctatggcgaggtcaagaagcccgagaccatcaactaccgtaccctgaag
ccggagaaggacggtctgttcggcgagcagatcttcggacctacccgcgactgggagtgc
gcctgcggcaagtacaagcgcgtgcgcttcaagggcatcgtgtgcgagcgctgcggcgtg
gaagtgaccaagagccgtgtgcgccgtgagcgcatgggccatatcgagctcgccgccccg
gtgacccacatctggttcttcaagggtgtgccgtcccgactgggctacctgcttgacatc
gcgccgaaggatctggagaaggtcatctacttcgccgcctacatggtcaccggcgtggat
gaggaacagcgtcatcaggatctgcccgatctgcaggacgagttcgacaccgaaatcacc
aatctggagaagcgccgcaacgccgagatcgaagatcgcgccaagaaggtggaagccgat
ctggcccagcttgaggccgaaggtgaagccaagggctccgcacgcgccaagctgcgcaac
agcgccgagcgtgagatggccgccatccgtacccgcttcgacgagcagattcagcgtctg
aacgccgtgttcgaccgcttcaagaacctgaagccgggcgacatggaaggcgatgtggac
ctgtggcgtgagatggaggatcgctacggcgattacttcgaaggctgcatgggcgccgaa
gccatcaagaagcgtctgcaggacttcgaccttgacgccgctgccaagcagctgcgcgag
gagatcgacaccggcaccggtcagcgcaaggcccgtgccctcaagcgcctcaaggtcgtc
aacgccttcctgaccaccggcaacaagccggaggccatggtgctcgatgtgattccggtc
attccgccggacctgcgcccgatggtgcagctcgacggtggccgtttcgccacctccgat
ctcaacgacctctaccgccgtgtgatcaaccgtaacaaccgactgaagcgactcatcgag
ctcggcgccccggaaatcatgctcaacaacgaaaagcgcatgctccaggaagccgttgac
tccctgttcgacaacggtcgtcgtggtcgcccggtgaccggtgcctcgaaccgcccgctc
aagtccctgagcgacatgctcaagggcaagcagggccgtttccgccagaacctgctgggt
aagcgagtggactactccggtcgttccgtgatcgtggtcggcccgtccctgaggatgcat
cagtgcggtcttccgaagccgatggccctcgagctgttcaagccgttcgtcatcaagcgt
ctggtggacctcaactatgcgcagaacatgaagagcgccaagcgtctggtggaccgtggc
gattccgaggtgtggggcgtgctcgaagaggtcatcgccgaacatccggtgctgctgaac
cgtgcccctacgttgcaccgtctgggcatccaggccttcgagccgattctggtcgaaggc
aaggccatccatctgccgccgctcgcctgcgccgcattcaacgccgacttcgatggcgac
cagatggcagtgcatctgccgctgtccgccgaagctcaggccgaagcccgctcgctgatg
atggcgtccgacaacattctgaagccggcggacggtcacaccgtgaccatgccgagccag
gacatgatcctcggtctgtattacctgaccaccgtcatcgacggcgccaagggccagggc
cgtgtgttctcctcgctggaagaggccgaaatggcccttgacaagcacgagatcgacatg
caggccaaggtgctcatccgtctgccgcaggacttcgtgctgccgaaggattgggagccg
agcgagctcaaggtcgtcgacccggaaccgggcagcccggacgtggtgaaggaagagcgc
ttccacgacggttccgtgctgttcgccacctcctacggccgtatcctgttcaacagcacg
ctgccgctggattacccgttcgtcaacgatcaggctccgaagaagcgtctgagcaagatc
gtcgacgacatcgcgacccgttatccgaccgcccaggtggccgcgacgctggacgccctg
aaggatatgggcttcacccgtgcaccgtggtccggtgtgtccttcgcgttctccgacgtc
atccagccgcccgagcgtgacgagtacatcgaaaagtacgaggccgaggctgacaaggtc
aacgagaactacgaaatcggtatgctcaccgaagaggagcgccgtcaggaactcatcgac
ctgtggaccaagtgcaccagcgaggtgtccgaggcggtcgaggaacacttcgactccaag
aacaacctggccatcatcgtgcagtccggtgcacgaggaaacatgatgcagatcaaccag
atcgcaggtatgcgaggcctcgtggcgaacccgaagggcgagatcattcctcgaccggtg
aagtccaactaccgcgacggtctgtccgtgctggagtacttcatctcccagcacggtgcg
cgtaagggcctggccgataccgcactgcgtaccgctgaatcgggctacctgacccgtcgt
ctggtggacgtctctcaggatgtaatcgtgcgcgaagaggactgcggcaccaagcgcggc
ctgcccatgaaggtcggcgagcgtgacgagaacggcaacctcgtgctcgtcaaggccgct
gatggcggcccgtactcccgcctgctcgcttccgatgtgatcgatcctgccgacggcgaa
accgtgctgtacaaggcgggcgacgcgctgtccatggatgtgctcaacgaccttgtcgcc
cacggtgtggaagaggtcaaggcccgttccgtgctgacctgcgaatccaagcgtggcgtg
tgcgccaagtgctacggctggtccctggccaccaacaagctggtggacgtcggcgaagcc
gtcggcatcgtggctgcacagtccatcggcgagcctggtacccagctgacgctgcgttcc
ttccactccggcggcgtcgcatccgcttccgatatcacccagggtctcccgcgtgttacc
gagcttttcgaagcccgtaccccgaagggcgaggctccgatcgccgagttcccgggcgtg
gtgaaggtcgaagacaccgatcgcggtcgtcaggtcaccctgaagccggacgacgactcc
gtcgagccgatcgtctacccggtgacccgtcgcgctccgatgctggtcaaggacggcgat
catgtcgaagccggcacccagctcatcgagggttccgtggatccgaagaagatcctgcgc
atcctcggtccgcgcgccgctcaggtcaacatcgtggaggaagtgcacaccgtgtaccgc
tcccagggcgtggatatccacgacaagcacatcgaggtcatcgtgcaccagatgctgcgt
cgtatcaccgtgatcgactccggcgacaccgacctgctgccgggcgaactcgtggaccag
gcacgcttcaaggccgccaacatggaggccgtgaagaacggtggcaagccggccgccggc
cgtccggagctgatgggcatcaccaaggcttcgctggccaccgactcctggctgtccgcg
gcctccttccaggagaccacccgcgtactcaccgaagccgccctgagccagaaggtcgat
gacctcaagggcctcaaggagaacgtcatcatcggtaagctcatcccggccggtacgggt
ctcgcccgctatcgcaatgccgtggtcgagcccgacaaggccatccgtgacaccatctat
ccgaacttcggcctgggtggcgacgaaacgggtgccgacttcggcgacgccgatctgtcc
gatgtggacttctccaacatcgacttcggtgatttgaagctcggcgacgacttcaacccg
gatgacttcctcgacgataacggcggtcagatggatctgggagacaccctctga
DBGET
integrated database retrieval system
