Paraburkholderia fungorum: OI25_5769
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Entry
OI25_5769 CDS
T03799
Name
(GenBank) DEAD/DEAH box helicase family protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
3.6.4.13
]
Organism
bfn
Paraburkholderia fungorum
Pathway
bfn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bfn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
OI25_5769
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bfn03019
]
OI25_5769
Messenger RNA biogenesis [BR:
bfn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
OI25_5769
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
B12-binding
AAA_25
Motif
Other DBs
NCBI-ProteinID:
AJZ63743
LinkDB
All DBs
Position
2:1995086..1996525
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AA seq
479 aa
AA seq
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MSFASLGLIDPLLRNLQDLNYQTPTPVQAKAIPAVLSGKDVMAAAQTGTGKTAGFALPLL
QRLVQHGPAVSSNRARVLVLVPTRELAEQVLQSFIDYGKGLDLRFLAAYGGVSINPQMMK
LRKGVDVLVATPGRLLDLNRQNAVQFDQVQTLVLDEADRMLDLGFSRELNAVFAALPAQR
QTLLFSATFTDDIRAMAESILRGPVNISVSPPNATASKIRQWVIPVDKKNKPDLFMHLVA
ENNWEHALVFVKTRNGVDYLAAMLDDAGYSVDTIHGDKPQPARLRALERFKTGEVSMLVA
TDVAARGLDIDDLPLVINVDLPIVAQDYVHRIGRTGRAGASGVAVSLVCADEAPQLAAIE
ALIRQTLRREEEPGFEAEHRVPQTSATGEIIKKPKKPKKPKVPQAAQGPVQVPGKKPRPQ
SSENKRKPAAQRAVTTGKGTSLSSGSPFSVQKPRGKPASKPAAGSRKPTGKPAGGRGKR
NT seq
1440 nt
NT seq
+upstream
nt +downstream
nt
atgtcttttgcctcgcttggcctgatcgatcccttgctgcgtaatttgcaggacctcaat
taccagacacctacgccggtgcaggccaaggcgattcccgccgtgctcagtggcaaggac
gtcatggctgcggcgcagaccggcacgggcaagacggcggggtttgcgctgccgctgttg
cagcggctggtgcaacacggcccggcggtgtccagcaaccgcgcgcgtgttctggtgctg
gtgcccacgcgtgagctggccgaacaggtgctgcaaagctttatcgattacggcaaaggc
ctcgacttacgatttctggccgcctacggcggtgtgagcatcaacccgcagatgatgaag
ttgcgcaaaggcgtggatgtgctcgttgccacgccgggccgtttgctggatctgaatcgc
cagaatgcagtgcagttcgatcaggtacaaacgctggtgctggacgaggccgaccgcatg
ctggatctgggcttttcgcgcgaactcaacgccgtctttgccgcgttgcccgctcagcgc
cagaccctgctgttctctgccacgtttaccgacgacatccgcgcgatggcggagagcatt
ctgcgcggcccggtgaatatcagcgtcagcccgcccaatgccacggccagcaagatcagg
cagtgggtgataccggtggataaaaagaacaagcctgacctcttcatgcacctggtggcc
gagaacaactgggagcacgcactggtgttcgtcaaaactcgcaatggcgtggattacctg
gcggccatgctggatgacgcgggctattcggtcgacaccatccacggcgacaagccgcaa
cctgcacgactgcgtgcgctggaacgcttcaagacgggcgaagtcagtatgctggtagcc
accgacgtggctgcgcgcgggctggatatcgacgacctgccgctggtgatcaacgttgat
cttccaatcgtggcgcaagactatgtgcaccgtattggccgtaccggccgcgcgggtgcg
agcggcgtggcggtgtcccttgtgtgtgccgatgaagcgccgcaactggccgcgattgaa
gcgctgatccggcaaacgctgcgccgtgaagaagagccgggttttgaggccgaacatcgc
gtgccgcaaaccagcgcgacgggcgagatcatcaagaaacctaaaaaacccaagaagccg
aaagtgccacaagctgcgcagggccccgtgcaagtgccaggcaaaaaaccgcgcccgcaa
agtagcgaaaacaaacgcaagccggcggcgcagcgcgctgtgactacgggtaaaggcaca
agtttgtccagcggcagcccattcagcgtgcaaaagccacgcggcaaacccgccagcaag
ccggctgcgggctcacgtaagcccactggcaaacccgctggtggccgcggcaaacgctaa
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