Bacteroides fragilis NCTC 9343: BF9343_0133
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Entry
BF9343_0133 CDS
T00239
Name
(GenBank) putative RNA helicase dead-box protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
3.6.4.13
]
Organism
bfs
Bacteroides fragilis NCTC 9343
Pathway
bfs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bfs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BF9343_0133
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bfs03019
]
BF9343_0133
03009 Ribosome biogenesis [BR:
bfs03009
]
BF9343_0133
Messenger RNA biogenesis [BR:
bfs03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BF9343_0133
Ribosome biogenesis [BR:
bfs03009
]
Prokaryotic type
rRNA helicases
BF9343_0133
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
RecG_N
CMS1
Ig_Tie2_1
Motif
Other DBs
NCBI-ProteinID:
CAH05912
UniProt:
Q5LIW4
LinkDB
All DBs
Position
complement(140054..141997)
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AA seq
647 aa
AA seq
DB search
MHPKIKIYRDLMKTFEELGVSPEIRKAIEEMGYENPMPVQEEVIPYLLGENNDVVALAQT
GTGKTAAFGLPLIQKINVKNRIPQSLVLCPTRELCLQIAGDLNDYSKYIDGLKVLPVYGG
SSIDSQIRSLKRGVHIIVATPGRLLDLMERKTVSLATVTNVVMDEADEMLNMGFTDSINA
ILADVPQERNTLLFSATMSPEIARISKNYLHNAKEITIGRKNESTSNVKHVVYTVHAKDK
YAALKRIVDYYPQIYGIIFCRTRKETQEIADKLMQEGYNADSLHGELSQAQRDTVMQKFR
IRNIQILVATDVAARGLDVDDLTHVINYGLPDDTESYTHRSGRTGRAGKTGTSIAIINLR
EKGKMREIERIIGKKFIAGEMPTGKQICEKQLLKVIDDLEKVKVNEEDINDFMPEIYRKL
EWLSKEDLIKRMVSHEFNRFVDYYRNREEIEVPTDSRSERAGKSREGKSSRQAEPGYTRL
FINLGKMDNFFPHELITLLNNNTRGRVELGRIDLMKNFSFFEVEEKQAQNVVKALNRTNW
NGRKVTVEVAGEEASTEHKGRGKRNEGNDQGGRGRSSAPSADRKERGKGSKDSKQADSRK
GKKPSREERGYSAARGPKGKDEWKQFFKDAEPDFSEEGWARRKPKKS
NT seq
1944 nt
NT seq
+upstream
nt +downstream
nt
ttgcacccgaaaataaagatatacagagatttaatgaagacatttgaagagcttggcgtt
tctccggagatacgtaaagctattgaagagatgggatacgagaatcccatgccggtacag
gaggaagtgattccatacctattaggagagaataatgatgtagtagctcttgcacagaca
gggacgggtaagaccgcagcgtttggcttgcccctcatccagaaaattaacgtaaaaaac
agaatacctcaatcactcgttctttgccccacacgcgagctttgcctccagatagcaggc
gacctgaacgactattccaaatacatcgacgggctgaaagtattgcccgtatacggcggt
tcatccatcgacagccagatacgcagcctgaaacggggtgtgcatatcattgttgccaca
ccggggcgactcctcgacctgatggaacgcaaaacggtatctcttgccactgtcacaaac
gtagtgatggacgaagcggacgaaatgctcaatatgggctttacggacagtatcaatgcc
atcctggcagatgttccacaagaacgtaacacactgcttttctcggccactatgagcccg
gaaatagcccgtatttcgaagaactaccttcacaatgcaaaagagatcaccatcggacgc
aagaacgaaagtacgagcaacgtgaagcatgtggtctataccgtacatgcaaaagataaa
tacgccgccctgaaacgcatcgtagactattatccgcagatttacggtatcatcttctgc
cgtacccgcaaagagacacaggaaattgccgataaactgatgcaggaaggttataacgct
gactcgttgcacggagaactctcacaggcacagcgtgacacggtgatgcagaagtttcgc
atccgcaacatccagattctggtagccaccgatgtagccgcacgcggactggacgtagac
gacctgacacacgtcatcaactacggattgccggacgatacggaaagttatacgcaccgt
agcggacgtacaggacgtgccggaaagacaggtacatccatcgccatcatcaatttgcgt
gaaaaaggaaagatgcgcgaaatagaacgcatcatcggtaagaaattcattgccggtgaa
atgcctaccggtaagcagatctgcgagaaacagcttctcaaagtgatagacgatcttgaa
aaagtaaaggtaaacgaggaggatatcaatgatttcatgcctgagatttaccgtaaactg
gagtggctgagtaaagaagacctcatcaagcgcatggtatcgcatgagttcaaccggttt
gtcgactattatcgcaaccgcgaagaaatagaggtgccgactgatagccgcagcgaacgc
gccggaaaaagccgtgaaggaaaaagcagccgccaggcagaaccgggttacacccgcctt
ttcatcaatctgggtaagatggataacttcttccctcacgaactgatcaccttgctcaac
aataacacacgaggaagagtagaattgggacgcatcgacctgatgaagaatttctcgttc
ttcgaagtggaagagaaacaagcacaaaacgtcgtaaaggcgctgaaccggacaaactgg
aacggacgtaaagtcacagtagaggtagccggagaagaggcatctacagagcacaaagga
cgtggaaagcggaatgaaggtaacgatcagggtggcagaggaagaagcagcgctccatct
gccgaccgcaaagagagaggcaaaggcagcaaagacagcaaacaagccgacagccggaaa
ggcaaaaagccaagccgtgaggaacggggatattccgcagcccgcggccccaaaggcaaa
gatgaatggaaacagttctttaaagatgccgaacccgacttcagcgaagaaggatgggca
agaagaaagcctaaaaagagctaa
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