Bombus impatiens (common eastern bumble bee): 100742741
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Entry
100742741 CDS
T04362
Name
(RefSeq) 5'-3' exoribonuclease 1 isoform X1
KO
K12618
5'-3' exoribonuclease 1 [EC:3.1.13.-]
Organism
bim
Bombus impatiens (common eastern bumble bee)
Pathway
bim03008
Ribosome biogenesis in eukaryotes
bim03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bim00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
100742741
09123 Folding, sorting and degradation
03018 RNA degradation
100742741
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bim03019
]
100742741
03009 Ribosome biogenesis [BR:
bim03009
]
100742741
03016 Transfer RNA biogenesis [BR:
bim03016
]
100742741
03036 Chromosome and associated proteins [BR:
bim03036
]
100742741
Messenger RNA biogenesis [BR:
bim03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
100742741
mRNA degradation factors
5'-3' decay
5' exonucleases
100742741
Ribosome biogenesis [BR:
bim03009
]
Eukaryotic type
Pre-60S particles
RNases
100742741
Transfer RNA biogenesis [BR:
bim03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
100742741
Chromosome and associated proteins [BR:
bim03036
]
Eukaryotic type
Gene silencing
piRNA pathway
100742741
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
XRN_N
XRN_M
XRN1_D1
XRN1_D2_D3
SH3_12
Dicer_dimer
Motif
Other DBs
NCBI-GeneID:
100742741
NCBI-ProteinID:
XP_012236205
UniProt:
A0A6P3ULA5
LinkDB
All DBs
Position
Unknown
AA seq
1628 aa
AA seq
DB search
MGIPKFFRYISERYPCLTEKLKDYQIPEFDNLYLDVNGIIHDCSHPDDTDITFRISEETI
FKNIFRYIEVLFRMIQPQKLFFIAVDGVAPRAKINQQRSRRFKTAKDAKIQEDKAKVKGT
ILPKEKRFDSNCITPGTVFMSKLDEQLKYFITYKISTDKLWQKCKVIFSGSQVPGEGEHK
IMDYIRYMKTQANYDVNTKHCLYGLDADLIMLGLCTHEIHFTLLREELTFGKKQKKVCLT
PEETKFCLFHLSLLREYINHEFSSLKEKLPFPYNLENIIDDWILMGFLIGNDFIPHLPNL
HIVHGALSVLYQVYKDVMPTLDGYINETGTLRLDRFEKFMERLSRFDTLQFSEYYADLKY
LESKTGRPLTETENSNDKRSGSSEETRSPRKMQDKEFDALLRSAADMSTGKYDDDEFGDD
KSDCEMYTMEFVQCKKDYYINKLKYENIDENFLRSQAEGYVRAIQWNLNYYYNGCCSWSW
YYPHHYAPYISDIKDFKDLKLEFDLGEPFLPFEQLLAVLPSYSKDLLPPAFQTLLTEDQS
PIIKYYPTNFETDLNGKEQEWEAVVLIPFINEKDIVDAMAPRYPQITPEERARNKHGPMC
LFTYTEENLGAYKAPQYFPDIINHAKVQLINREDIAVPREKLVRGLCPGVKLDVYYPGFS
TLQYIEHTASLEQAKVKVFQRQSRRESMILHIKPQSNIDLTTIGSKLLGKTVYVNWPHLK
EGLVIGVSESSRKMNSVNQFDNINETEWNVWKKRITEMYKDHLGVDIGDTKFLVHIRLLV
GKKYIFDAQGKVNIEKHWTEMPTCYAYQTIVKDITTYCNNVQSYKTVSDIFEPGTVCFML
AHPYYGAMGKVHESAICKKSGRIKVSVTTMREPSFEAIKQIQADLQTQYMHGSVASQRLG
ISSLLLSRITGTIFVKQSSNELQQDDVTYNIGFNLKFNKKNAEIPGYTRKGELGQWYYSP
KALDLIRSYMLRCPTLFERLAQNPITCIFKEEDLFTKGSEELTDTVAWLKDQLHGIESRA
CGREIIENTIMKNLEEIVDAYLESPNSIGKIVDMQVQPYLLYTPTLRITNLPPDPKTQTQ
LLDRICCIKDNFTVPLGYKGTIIGIQKMENTLDTMYDVLFDKPIIGGFSINGSSEFRAYR
LSVLDFINISYGQRIEQGKGTQMNIESTEQWKNIMAINQDAQSRTNASNVIYRNEKHLTV
EAPMSPKSWSTQKNIEEIPKNQLPHKFKQYNAQNTVSVRKSHKPVAKSVQLSQNVPKKLM
AEPTSEFQAIWNELHKKQELIKAVPQAENSLQDPSAFLKAVLKISDGNSQEPVHPGVSKT
TKSLNNSQEEKKALDTPPLVQQMFDHARQNDKAPTWYCSQLLNYYQLSGVGMPRYSYFGV
GDSNLIQAHILLPDKRIFVGDPCANHEQAAGSAAKKVYTELKLANLLPNMKIPLPPPQHW
YSNPQNSNWPQNVRPPPVPYYPPEPKLLQLFPDWVQKDHHRVPGLQETPKHDKHQYKHHI
QSKVERTHNQKEPKAETKKCTAFVPLQAQKKSRHITAKQAVSKDSANQSAKDKPQPTVQQ
KGKESPTKTIKVEAVSTTLEKQKPVQNNSHQVQNTQTVIKPKKSRVAAKFCISTQIEEAN
HSKNQNSG
NT seq
4887 nt
NT seq
+upstream
nt +downstream
nt
atgggtataccgaagttctttcgatatataagcgaaagatatccttgtcttactgaaaaa
ttgaaggactatcaaatacctgaatttgataatttatatttagatgtgaatggtattata
catgattgctcacatccggacgatacggatattacattccgtatttcagaagagaccata
ttcaaaaatatatttcgttacatagaagtattgtttcgtatgatccagcctcagaagtta
ttttttatagcagttgatggtgtggcaccacgtgcgaaaattaatcaacaaagaagcaga
cgattcaagactgcgaaagatgcaaagattcaggaagataaagcaaaggttaagggtaca
attttacccaaagaaaaaagatttgattctaattgtataactccaggaacggtttttatg
tccaaacttgatgaacaattaaagtattttattacatataagatatcaactgacaaactt
tggcaaaagtgtaaagtcatattcagtgggtcccaggtacctggagaaggagaacacaaa
ataatggactatatacgttatatgaaaacacaagcaaattatgatgtaaatacaaaacat
tgtttatatggtttagatgcagatttaataatgttaggtttatgcacgcatgaaatacat
tttacattattgagggaagaattgacatttggtaaaaagcaaaaaaaagtttgtttaaca
ccagaagagacaaaattttgtctgtttcatttatctctgttaagagagtatataaatcac
gaattttcctcattaaaggaaaaattgccttttccatataatttggaaaatataatcgac
gactggattttaatgggatttcttataggaaatgattttataccgcatctgccaaattta
catattgtacatggcgcattgtctgtattgtatcaagtatataaggatgtaatgcctaca
ttagatggttacataaatgaaacaggaacgttacgattagatagatttgaaaaatttatg
gaaagacttagccgttttgacacattgcaattttcggagtattatgcagatctaaagtat
ctcgaaagtaagacagggagacctctcactgaaactgagaactccaatgacaaaaggtca
ggaagcagtgaagagactcgttctccaaggaaaatgcaagataaggaattcgatgcttta
cttagatctgccgcggatatgtcaacaggaaagtatgatgatgatgaatttggtgatgat
aaatcagattgtgaaatgtacactatggaattcgttcaatgcaaaaaggattattatata
aataagctaaaatacgaaaatatagacgaaaattttttacgttcacaagctgagggttac
gttagagcaattcaatggaatttaaattattactataacggttgttgcagctggtcgtgg
tactatccacaccattatgcaccttatatttcggatataaaagattttaaagacttgaaa
ttggaatttgatttaggggaaccatttttaccgttcgaacaattattagccgtgttgcca
tcttatagtaaagacttattaccgccagcattccaaacattgttaaccgaggatcaatct
cctataattaaatattatccgacgaattttgaaacagatttaaacggcaaggagcaggaa
tgggaggctgtagtactcattccatttataaatgagaaagatatagtagacgcaatggcg
cctcgttatccacaaataactccggaagaacgagcaagaaacaagcatggtccaatgtgt
ttgttcacttatacagaagaaaatttaggtgcttataaggcacctcaatattttcctgac
attattaatcacgcaaaagttcaactaattaatcgtgaggacattgctgtacctcgggaa
aaattagttcggggcttgtgccctggtgtaaagttggatgtatattatcctggtttttct
actctacaatatatagaacatactgcgagtttagaacaagccaaagtaaaggtattccag
agacaatcgcgccgagaaagtatgattctccacataaaaccacagtccaatattgactta
acaaccataggttcgaaattattaggtaaaacagtgtacgtgaattggcctcatttgaag
gaaggtttggtaatcggtgtttctgaatcaagcaggaagatgaattcggttaatcagttt
gacaacatcaatgaaacagaatggaatgtgtggaagaaacgtataacagaaatgtataag
gatcatctcggagtggatatcggagatacgaagtttttagttcatatacgactattggta
ggcaaaaagtacatctttgacgctcaaggaaaggtgaacatcgagaaacactggaccgaa
atgccaacttgttatgcttatcagactatagtaaaagatatcacaacctattgtaataat
gtacaatcatacaagactgtcagtgatatctttgaaccaggaactgtatgtttcatgttg
gctcatccatattatggagcaatgggaaaagtacatgaatccgcgatctgtaagaagtcg
ggcagaataaaagtatctgtaacaacgatgcgagagccgtcgtttgaagcgatcaaacag
attcaagcagatctccaaacccaatatatgcacggcagcgtagcttcgcagaggttaggt
ataagctccttgcttttaagtagaattaccggcacgattttcgtaaaacaatcctcaaat
gaacttcagcaagatgatgttacatataatatcggatttaatttaaagttcaacaaaaag
aacgcggaaatacctggttacactagaaaaggggaacttggtcaatggtattacagtcct
aaagctctcgacttaatccgtagctacatgttgaggtgccccactttgtttgagcgttta
gctcaaaatccaatcacatgtatttttaaagaagaagatctatttactaaaggttctgaa
gaactaactgatacagtggcatggttgaaagatcaacttcatggaatagaaagccgtgct
tgtggcagggaaattatcgagaatactataatgaaaaaccttgaagaaatagtggatgcg
tatctcgagtcaccaaatagcattggaaaaattgtggacatgcaagttcaaccatatttg
ctttatacacctactttgcgtataacaaaccttccacctgatccaaaaacgcagactcag
ctattggacagaatttgctgtattaaagataatttcacggtacctcttggatacaaggga
actataattggaatacaaaagatggaaaatacgttggacactatgtacgatgttttgttc
gacaaaccaatcataggtggatttagcataaatggatcttctgaattccgcgcgtatcgt
ttatcagtccttgattttataaatatcagttatgggcagagaatagagcagggtaaagga
acacaaatgaatatagaatccacagagcaatggaagaacatcatggccatcaatcaggac
gctcaatcgcgcacaaatgccagcaatgttatatataggaacgaaaagcatttaacggtg
gaagcaccaatgtcaccaaagtcatggtctacacaaaagaatatagaggaaattccgaag
aatcagctgcctcataaattcaagcagtataacgcgcagaacactgtgagcgttcggaaa
tcgcataaaccagtagcaaaaagtgtacagctttctcaaaacgtgccgaagaagctgatg
gcagaaccgacatccgagttccaggcaatatggaatgaattgcataaaaaacaggagcta
atcaaagctgtgccacaagccgaaaattcactacaagatcctagtgctttcttaaaagca
gtgttaaaaatttccgatggaaattctcaagaacctgtccaccctggagtatctaaaaca
actaaaagtttaaataactcacaagaagaaaagaaggcattggacacgccacctttagtg
caacaaatgtttgatcatgctcgacagaacgacaaggcgccaacttggtattgctcacaa
ttactgaattactatcaactcagtggagtgggaatgcctcgatatagttattttggtgtt
ggagatagtaatttgatccaagcacatattcttttaccagataaaagaatatttgttgga
gatccttgtgcgaatcacgaacaagcagcaggaagtgctgcaaagaaagtttatacagaa
ctaaaattagctaatttattgccaaatatgaagatacctttaccacccccgcaacattgg
tactctaatccccagaacagtaattggccacagaatgtaaggccaccaccagtaccatat
taccctccagaacctaaacttcttcaacttttccctgattgggttcaaaaggaccatcat
cgcgtacctggacttcaagaaacgcccaagcatgataaacatcagtataagcatcatatt
caatcaaaagtagaacgaactcataatcagaaggaaccaaaggcagagacaaagaagtgc
acagctttcgtacccttacaagcacaaaagaaaagcagacacatcacagccaaacaggct
gtaagcaaagacagtgcaaatcaaagtgccaaagacaaacctcagcccacagtacaacag
aagggaaaggaatcgccaacgaagacgataaaagtggaagctgtcagcacgacccttgag
aagcagaaaccagtgcagaataattcacatcaagtacaaaatacacagaccgtaataaag
cctaaaaagtcgcgagttgcggcgaaattttgcatatcaacacaaattgaagaagccaat
cacagtaaaaatcaaaattcaggttaa
DBGET
integrated database retrieval system
