Brachyspira intermedia: Bint_1107
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Entry
Bint_1107 CDS
T01847
Name
(GenBank) VacB, Exoribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
bip
Brachyspira intermedia
Pathway
bip03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bip00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Bint_1107
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bip03019
]
Bint_1107
03016 Transfer RNA biogenesis [BR:
bip03016
]
Bint_1107
Enzymes [BR:
bip01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
Bint_1107
Messenger RNA biogenesis [BR:
bip03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Bint_1107
Transfer RNA biogenesis [BR:
bip03016
]
Prokaryotic type
tRNA degradation factors
Bint_1107
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
S1
Motif
Other DBs
NCBI-ProteinID:
AEM21730
UniProt:
G0EMP2
LinkDB
All DBs
Position
complement(1245309..1247300)
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AA seq
663 aa
AA seq
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MKVIKLLKRINKEKELDISEYKNKYVETKKDKLRFDKMLQKSVSMGLVMKKSNTLKLTNE
GKIYLERELKQITNKERDILKDRKSKSKNKKNDTGNKKTSIPKPEIKIDVNNAKKDAEII
AKAYNVPTEFPKKCLEEAKLLPDSMENVELEFDRIDLRDIRTVTIDGADSKDFDDAISIE
KLNDGYKLGIHIADVSHFVVMGSALDREARKRGNSVYLIDTVYPMFPHELSNGICSLNEG
VSRFTMTVFVTIDNQGNVKESTFHKSVIKSSRRLTYDYAQDVLDGIEQDEDWLVELLKNA
DDVKKILLQKRIDNGSIEFNLNETQIILDKGGNPKDFFIGERKETHKIIEELMLIANCEV
AKRLKNIKGSIYRVHDSPDQEKLDTFTRIAFNRGYRVTRDADGNLDFHSFIESIMGKPDE
KLLLTLLLRSMKQAIYDVNNIGHFGLGFEYYTHFTSPIRRYTDLLTHRLLKQALEGVNNL
KPTMQQFYTNSAQWCSKTERIAVECERSLDKVKAARFMKDKVGNEYNGIVSGVTNFGIFV
EIEDRGIEGLIRYAVLKSHYRYDEHEQAAYSEEDAKWYTLGDRIRIVVYKVDVKELFIDF
IPASEFDNSFDDRDIIDSRDFLKKKKNKKEIYSRKSHKSSKDRKRGSKDRINRKERKKSK
KRR
NT seq
1992 nt
NT seq
+upstream
nt +downstream
nt
atgaaagttataaaattgctgaaaagaataaataaagaaaaagaattagatatatcagaa
tataaaaataaatatgtagaaactaaaaaagataaattacgttttgataaaatgcttcaa
aagtcagtttctatgggactggtaatgaagaaatctaatactttaaaacttaccaatgaa
ggaaaaatatatttagaaagagaattaaaacaaataacaaataaagaaagagatatatta
aaagatagaaagtcaaaatcaaaaaataaaaaaaatgatacaggcaataaaaaaacaagc
ataccaaaaccagaaataaaaatagatgttaataatgctaaaaaagatgctgagataata
gcaaaagcatataatgtgccgactgaatttccaaaaaaatgtttggaagaagctaaacta
ttaccagacagcatggaaaatgtagaattagaatttgacagaatagatttaagagatata
aggactgtaacaatagacggagcagactcaaaagattttgacgatgcaataagtatagaa
aaattaaatgacggttataaattaggtattcatattgctgatgttagtcattttgtagtt
atgggaagtgctttagacagagaggcaagaaaaagaggaaacagcgtttatttaatagat
acagtttatccaatgttcccgcatgagctttcaaatggaatatgttctttaaatgaaggt
gtaagcagattcacgatgactgtatttgtaacaatagacaatcaaggaaatgtaaaagaa
agtacttttcataaaagcgttataaaatcaagcagaagattaacttatgattatgctcaa
gatgttttggacggtatagaacaagatgaagattggcttgtagaattactaaaaaatgct
gatgatgtaaaaaaaatacttcttcaaaaaagaatagacaatggaagtatagagtttaat
cttaatgaaactcaaataatattggataaaggcggaaatcctaaagacttctttatcggt
gaaagaaaagaaactcataaaataatagaagaattaatgcttattgctaactgtgaagta
gctaagagattaaaaaatataaaaggttctatatacagggtgcatgatagtccagatcaa
gaaaagctagacacattcacaagaatagcatttaatagaggctacagagttacaagagat
gcagacggtaatttggactttcattcatttatagaatctataatggggaaaccggacgaa
aaattgcttcttaccctactcttacgttctatgaagcaagctatatacgatgttaataat
ataggacacttcggattaggttttgaatattatacccattttacttcgcctataagaaga
tacactgacttactaactcatagacttttaaagcaggcattagaaggagtaaataattta
aaacctactatgcagcagttttatactaattcagctcaatggtgttcaaaaactgaaaga
atagcagttgaatgcgaaagaagtttggataaagtaaaagctgcaagatttatgaaagac
aaggttggaaatgaatataacggaatagtaagcggcgttacaaatttcggaatattcgtt
gaaatagaagacagaggaatagaaggtttaataagatacgctgttttaaaatcacattac
agatatgatgaacatgaacaggcggcctacagcgaggaagatgctaaatggtacacattg
ggcgacagaataagaatagtagtttataaagttgatgttaaagaattattcattgacttc
atacctgcaagcgaatttgataatagtttcgatgacagagatataatagacagtagagat
tttttgaagaaaaagaaaaacaaaaaagaaatatattcaagaaaatctcataaatcaagc
aaagatagaaaaagaggttcaaaagacagaataaatagaaaagaaagaaaaaaatcaaaa
aagagaagataa
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