Brevibacterium linens BS258: A2T55_10340
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Entry
A2T55_10340 CDS
T04319
Name
(GenBank) cold-shock protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
3.6.4.13
]
Organism
bly
Brevibacterium linens BS258
Pathway
bly03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bly00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
A2T55_10340
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bly03019
]
A2T55_10340
03009 Ribosome biogenesis [BR:
bly03009
]
A2T55_10340
Messenger RNA biogenesis [BR:
bly03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
A2T55_10340
Ribosome biogenesis [BR:
bly03009
]
Prokaryotic type
rRNA helicases
A2T55_10340
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
UvrA_inter
HEM4
AIRS_C
Motif
Other DBs
NCBI-ProteinID:
AMT94128
UniProt:
A0A142NMW7
LinkDB
All DBs
Position
2308846..2310648
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AA seq
600 aa
AA seq
DB search
MTDVSANEETTPRFSELGLHPLVLKAVEAQGYEIPTPIQAETIPTLLSGRDVIGLAQTGT
GKTAAFALPALSDLAEAGRADDGPFALVLTPTRELAIQVAEAFTSYATELSDFSVLPIYG
GQAYGPQLAGLRRGAQVVVGTPGRVIDHLKKGSLKLGSLKHLILDEADEMLKMGFAEDIE
EIFSQVGPDRQVALFSATMPTSIHRITGKYLDDPKEVRIAAKSQTGANIRQRYFMVQHSH
KLDALTRILEVEEYEGIIMFVRTKQATEELAEKLRARGFKTAAINGDIPQQARERTIDQL
REAKIDILVATDVAARGLDVERITLVVNYDIPHDTESYVHRIGRTGRAGRSGEAILFVTP
REQRMLSSIERATKQKVEPLTLPSVEELTNTRVEKFTKRIDDVLAQTELSELTDVIEQYS
LSRDVPASNIAAALASLVLESNTLKAEPMPEPARRQNRDRDRDGGRDGGRPGRGGRARDE
NMTTYRLALGRNERLQPGAVVGAIANEGGITSKQIGHIDIRSNHTLVDLPKDLDPGVLRK
LSHTEIQGRPIDIRPDSGRPGRPFKKRNFDKQPGDGRNFKGDRRGGKKFGGRGDRPRDRY
NT seq
1803 nt
NT seq
+upstream
nt +downstream
nt
atgaccgatgtgtccgcaaacgaagaaaccactccgagattctccgaactgggcctccac
ccgctcgtgctcaaggccgtagaggcgcagggctacgagatccccacccccatccaggcc
gagaccattccgaccctcctgtcgggccgtgacgtcatcggcctcgcccagaccggaacc
ggcaagaccgcggctttcgccctgccggctctgtccgacctcgccgaggcggggcgcgcc
gacgatggcccgttcgctctcgtactcacccccactcgcgaactcgcgatccaggtcgcc
gaggcgttcacctcctacgctacggaactgtccgacttctccgtcctcccgatctacggc
ggtcaggcctacggcccgcagctggcgggtctgcgccgcggagcgcaggtcgtcgtcggc
accccgggtcgtgtcatcgaccacctcaagaagggttcgctgaagctcggcagcctcaag
cacctcatcctcgatgaggccgacgagatgctcaagatgggcttcgccgaagacatcgaa
gagatcttcagccaggtcgggccggaccgtcaggtcgcactgttctcggccaccatgccg
acttcgatccaccgcatcaccggcaagtacctggacgaccccaaggaagtccggatcgcc
gcgaagtcgcagaccggtgcgaatatccgtcagcgctacttcatggttcagcactcgcac
aagctcgacgccctgacccgcatcctcgaggtcgaggagtacgagggcatcatcatgttc
gtgcgcaccaagcaggccaccgaggagctcgccgagaagctgcgcgcccgcggattcaag
accgctgccatcaacggcgacatcccgcagcaggctcgtgagcgcacgatcgatcagctg
cgcgaggcgaagatcgacatcctcgtcgccaccgatgtggcagcccgcggtctcgacgtc
gagcgcatcacgctcgtcgtcaactatgacatcccgcatgacaccgagtcctacgtccac
cgcatcggccgcaccggtcgtgccggacgctccggtgaagcgatcctcttcgtcacccct
cgcgagcagcgtatgctcagctcgatcgagcgcgccacgaagcagaaggtcgagccgctg
accctgcccagcgtcgaagagctgacgaacacccgcgttgagaagttcacgaagcgcatc
gacgatgtcctcgcacagaccgaactctccgaactcaccgacgtcatcgagcagtactcg
ctctcccgcgatgtgccggcctcgaacatcgccgccgctctggcctccctcgtcctcgag
tcgaacacgctcaaggccgaaccgatgccggaaccggcgcgtcgtcagaaccgtgaccgc
gaccgcgatggtggtcgtgacggtggccgtccgggccgcggtggtcgtgcccgtgatgag
aacatgacgacctaccgtctggccctgggacgcaacgagcgcctgcagccgggtgccgtg
gtcggtgcgatcgcgaacgaaggtggaatcacctcgaagcagatcggccacatcgacatc
cgctcgaaccacacgctcgtcgacctgcccaaggacctcgacccgggcgtgctgcgcaag
ctctcccacaccgagatccagggccgccccatcgacatccgtccggattcgggtcgcccg
ggacgcccgttcaagaagcgcaacttcgacaagcagcccggcgacggccgcaacttcaag
ggcgatcgccgaggcggcaagaagttcggcggacggggcgaccgtccccgcgaccgctac
tga
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