Burkholderia mallei 6: DM78_1116
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Entry
DM78_1116 CDS
T03489
Name
(GenBank) ribonuclease, Rne/Rng family domain protein
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
bmae
Burkholderia mallei 6
Pathway
bmae03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bmae00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DM78_1116
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bmae03019
]
DM78_1116
03009 Ribosome biogenesis [BR:
bmae03009
]
DM78_1116
Enzymes [BR:
bmae01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
DM78_1116
Messenger RNA biogenesis [BR:
bmae03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
DM78_1116
Ribosome biogenesis [BR:
bmae03009
]
Prokaryotic type
rRNA processing factors
DM78_1116
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
AIO58089
LinkDB
All DBs
Position
1:complement(1199341..1202613)
Genome browser
AA seq
1090 aa
AA seq
DB search
MKRMLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVVTRIEPSLEACFVNY
GEDRHGFLPFKEVARQYFKEGVDMRSARIQDALREGQELIVQVEKEERGNKGAALTTFIS
LAGRYLVLMPNNPRGGGVSRRIEGDERQELRETMAQLQIPDGMSMIARTAGIGRSAEELQ
WDLNYLLQLWRAIEAASQSGHPGQPMLIYLESSLVIRAIRDYFQPDIGEILIDTTEIHDQ
ARAFMDIVMPDNVGKVKRYHDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALV
AIDVNSARATKGADIEETATRTNLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVE
QRLKDALKHDRARVQMGKISRFGLMELSRQRLRPALSEGSHVTCPRCNGTGHIRDTESSA
LQVLRIIQEEAMKENTAAIHCQVPVEVTAFLLNEKRQEINKIESRFKVGVVLIPNKHLDT
PHYKLERLRHDDARLDDPRASWKMAEEAARELEAETGYSKRAEETKPRQEAAVKGITPER
PAPSPAPQRQSAPEAAAPVAAAPASGGGFMKWLKGLFGAQPAAVPAPAPAAQETAARPAR
ERAERGERGEKAERGERGGDRNRNRRGGAAQQGGGRDQAAAGGGRAQAPRAEREGKETRE
PREGREARGGRDNREGREARETREAREPREQREPREAREQREARERAETVDAAEAPRGER
RERGERRKPAPHVATLETVNRGESAHAETAEKPLYALGAEAGVDADSNARDGEERRRRRR
GRRGGRREREDEVAGAVQAAEGSEGVTAEAEALEHAEHAQQRVAPVANQAPEHAAQAGAG
VAAAAAATVAAEAIAHVESGAKVEPQPAAEASAGDTEQAEAVPARSIEAPAQAASTGQAE
AVQAAPAAPAHVTPATADVAREPAAPAETASAETTPAEIPPAEAAPAEAPAAEASEVAAS
AVASAPAPAPAAEPAPAAEPHRPAPVSAAPASAAPAEADAAREPAAVAEPHVPAAAATPT
PASVATTPGVSLDTALAAAGLVWVNTDTDKLRAAQAAAAQIVQPVRVPRERKPLPPVDAT
PMQQVETTHR
NT seq
3273 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgcatgctgttcaatgcgacgcagcaggaagaactgcgcgtcgccatcgtcgat
gggcagaagctcatcgatatcgatatcgaaaccgccggccgcgaacagcgcaaaggcaac
atctacaagggcgtcgtcacccgcatcgaaccgtcgctcgaagcctgcttcgtcaattac
ggcgaagaccgccacggcttcctgccgttcaaggaagtcgcccgccagtacttcaaggaa
ggcgtcgacatgcgctccgcgcgcatccaggacgcgctgcgcgagggccaggagctgatc
gtccaggtcgagaaggaagagcgcggcaacaagggcgcggcgcttaccaccttcatctcg
ctcgccggccgctacctcgtgctgatgccgaacaacccgcgcggcggcggcgtgtcgcgc
cgcatcgagggcgacgagcgccaggaactgcgcgagacgatggcgcaactgcagatcccc
gacggcatgagcatgatcgcccgcaccgcgggcatcggccgcagcgccgaggaactgcag
tgggacctgaactacctgctgcagctctggcgcgcgatcgaggcggcgtcgcaaagcggc
caccccggccagccgatgctgatctacctcgaatcgagcctcgtgatccgagcgatccgg
gactatttccagccggacatcggcgaaatcctgatcgacacgaccgagatccacgatcag
gcgcgcgcgttcatggacatcgtgatgcccgacaacgtcggcaaggtgaagcgctatcac
gacgacgtgcccctcttctcgcgcttccagatcgagcaccagatcgaaaccgcgtactcg
cgcacggtgccgctgccgtcgggcggcgcgatcgtgatcgaccacaccgaggcgctcgtc
gcgatcgacgtgaactcggcgcgcgcgaccaagggcgcggacatcgaggaaacggcgacc
cgcacgaacctcgaggcggccgacgaagtcgcccgccagttacgtctgcgcgacctgggc
ggcctgatcgtgatcgacttcatcgacatggaatcggccaagagccagcgcgaagtcgag
cagcgcctgaaggacgcgctcaagcacgaccgcgcgcgcgtgcagatgggcaagatctcg
cgcttcggcctgatggagctgtcgcgccagcgcctgcgcccagccctgtccgaaggcagc
cacgtcacctgcccgcgctgcaacggcacgggccacatccgcgacaccgaatcgtccgcg
ctgcaagtgctgcggatcattcaggaagaagcgatgaaggagaacaccgcggcgatccac
tgtcaggtgcccgtcgaggtgacggccttcctgctcaacgagaagcgccaggaaatcaac
aagatcgaatcgcgcttcaaggtcggcgtcgtgctgattccgaacaagcacctcgatacg
ccgcactacaagctcgagcgcctgcgtcacgacgatgcgcgcctcgacgatccgcgcgca
tcgtggaagatggccgaggaagccgcccgcgagctcgaggcggaaaccggctacagcaag
cgcgccgaggaaacgaagccgcgccaggaagcggccgtcaagggcatcacgcccgagcgg
ccggcgccgagccccgcgccgcagcgccagagcgcgccggaagcggcggcgcccgtggcc
gccgcgcccgcgagcggcggcggtttcatgaaatggctgaagggcctgttcggcgcgcag
ccggctgcggtgcccgcaccggcgcccgccgcgcaggaaacggctgcgcgtccggcgcgc
gagcgcgcggagcgtggtgagcgcggcgagaaggccgagcgcggcgaacgcggcggcgat
cgcaaccgcaaccgccgcggcggcgccgcgcagcaggggggtggacgcgaccaggcggcg
gcaggcggcggccgcgctcaggcgccgcgcgccgagcgcgaaggcaaggaaacccgcgag
ccgcgcgaaggccgcgaagcacgcggcggccgggacaaccgggaaggccgcgaggcgcgc
gaaacccgcgaggcgcgcgagccccgtgaacaacgcgagccgcgcgaggcacgcgagcag
cgcgaagcgcgcgagcgcgccgaaacggtcgacgccgcggaagccccgcgcggcgagcgc
cgtgaacgcggcgagcgccgtaagccggccccgcatgtcgcgacgctcgaaacggtgaat
cgcggcgaaagcgcacatgcggaaaccgccgaaaagccgctgtacgcgcttggcgcggaa
gccggcgtcgacgcggattcgaacgcacgcgacggcgaagaacgccgccgccgccgccgt
ggccgccgtggcggccgccgcgagcgtgaagacgaagtcgcgggcgccgtgcaggcggcg
gaaggcagcgaaggcgtgacggccgaggccgaagcgctcgagcacgccgagcacgcgcaa
caacgcgtcgcgccggtagcgaaccaagcgcccgagcatgccgcgcaagcgggtgcgggc
gtcgcggcggcagccgccgcgaccgtcgcagccgaggcgattgcgcatgtcgagagcggc
gcgaaggtcgagccgcaaccggcggccgaggcatccgccggcgatacggaacaggccgag
gcggtgcccgcgcggtccatcgaagcaccggcgcaagcggcttcgacgggtcaagcggaa
gccgtgcaagccgcaccggccgcaccggcacacgtgacgccggccacggccgacgtcgcg
cgcgagccggccgcgcctgccgaaactgcgtctgccgaaacgacgcctgctgaaatcccg
cctgccgaagccgcgcccgccgaagcaccggccgcggaagcgtccgaagtggccgcgagc
gcggtcgcttcggccccggccccggccccggccgcggagcccgcgccggccgccgagccg
caccggccggcgcccgtctcggccgcccccgcctcggccgcgccggccgaagcggacgcc
gcgcgcgagccggccgccgtcgccgagccgcacgtgccggcggccgccgcgacccctacc
ccggcttcggtggcgaccacgccgggcgtgagcctcgatacggcgctcgcggccgccggc
cttgtctgggtcaataccgacacggacaagctgcgcgccgcacaggccgccgccgcgcaa
atcgtgcagcccgtgcgcgtgccgcgcgaacgcaagccgctgccgcccgtcgacgcgacg
ccgatgcagcaggtcgagacgacgcaccgctga
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