Bacillus methanolicus: BMMGA3_01730
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Entry
BMMGA3_01730 CDS
T03209
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
bmet
Bacillus methanolicus
Pathway
bmet03030
DNA replication
bmet03410
Base excision repair
bmet03420
Nucleotide excision repair
bmet03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bmet00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BMMGA3_01730 (ligA)
03410 Base excision repair
BMMGA3_01730 (ligA)
03420 Nucleotide excision repair
BMMGA3_01730 (ligA)
03430 Mismatch repair
BMMGA3_01730 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bmet03032
]
BMMGA3_01730 (ligA)
03400 DNA repair and recombination proteins [BR:
bmet03400
]
BMMGA3_01730 (ligA)
Enzymes [BR:
bmet01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
BMMGA3_01730 (ligA)
DNA replication proteins [BR:
bmet03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
BMMGA3_01730 (ligA)
DNA repair and recombination proteins [BR:
bmet03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
BMMGA3_01730 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
BMMGA3_01730 (ligA)
MMR (mismatch excision repair)
DNA ligase
BMMGA3_01730 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
BMMGA3_01730 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
HHH
PTCB-BRCT
RNA_pol_A_CTD
BRCT_2
5_3_exonuc
HHH_8
Motif
Other DBs
NCBI-ProteinID:
AIE58817
UniProt:
I3E3N9
LinkDB
All DBs
Position
318803..320809
Genome browser
AA seq
668 aa
AA seq
DB search
MDLQTVEKRIKDLQNLLNQYNYEYHVLDKPSVPDAEYDRLMLELVELESQFPQFKTPDSP
TQRIGGEVLDTFKKVEHRTPMLSLSNAFNEQDLRDFDRRIRQIIGNDFSYVCELKIDGLA
VSLRYENGIFVQGATRGDGTTGEDITANLRTIRSIPLRLNEPVTIEVRGEAFMPRRSFEA
LNKVRKERGEEPFANPRNAAAGSLRQLDPRIAASRNLDIFLYGIGDVGETGITSHSEGLD
FLEKLGFKTNKERKTCANIDEVIEFVNSWVEKRQSLAYDIDGIVIKVDSLEQQRVLGTTA
KSPRWAIAYKFPAEEVVTILKDIELSVGRTGVVTPTAILEPVRVAGTVVQRASLHNEDLI
REKDIKIGDHVVVKKAGDIIPEVANVLADKRTGEEKDFHMPTHCPECESELVRLNGEVAL
RCINPKCPAQIREGLIHFVSRNAMNIEGLGEKVISQLFSANLVHDVADIYKLTREQLIGL
ERMGEKSVNNLLQAIEASKQNSLERLLFGLGIRHVGAKAAKTLAMEFGTMDRLASASREE
LTAINEIGEKMADSIVTFFEMEEVRELIQELKASGVNMEYKGPAPVTRTESESFFSGKTI
VLTGKLAQLTRNEAKERIEALGGNVAGSVSKKTDLVIAGEDAGSKLTKAEELGIEVWNEE
RLLEELTK
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atggatttacaaacagttgaaaagcgaataaaagatttgcaaaatcttcttaatcaatat
aactatgaataccatgtccttgataagccatccgtaccagatgccgagtatgaccgcctt
atgcttgaactggttgaattggaatcccagtttccgcaattcaagactcctgattcacct
acccagcgtataggcggagaagttcttgatacgtttaaaaaggtggagcatcgaacgccg
atgctcagtcttagcaatgcattcaatgagcaggacttgcgtgattttgatcggcgcatt
cgccaaataatcgggaacgacttctcatacgtgtgcgagctgaaaatcgatggacttgcc
gtgtctcttcgttatgaaaacggcatatttgttcagggtgcaacaagaggagacggtaca
accggagaagatattacagcaaacttgagaacaattcgctcgattccattgaggcttaac
gagccggtaacaattgaagttcgcggcgaagctttcatgccaaggcggtcttttgaagca
ttaaacaaagtccgcaaagaacgtggcgaagaaccgtttgcaaacccgagaaatgcagct
gctggttctctaaggcagcttgatccgcggattgctgcatcccgcaatcttgacatcttc
ctctacggaatcggtgatgttggggaaaccgggataacgagccacagtgaaggccttgat
tttcttgaaaagcttgggttcaaaacgaataaagagcgcaagacttgtgcgaacattgat
gaagtgattgagtttgtcaacagctgggttgaaaaacgtcagagtctggcatatgacatt
gacggcattgtgattaaagtagactctttagagcagcaaagagtgcttggaacaacagcc
aaaagcccgcgctgggcaattgcctataagtttccggcagaagaggttgttacgatttta
aaagatatcgaactgagtgtagggcgtacaggagttgtcactccgactgcgattttagaa
ccggtccgggttgcagggactgtggtgcaaagggcatctttgcacaatgaagatttaata
cgtgaaaaagatatcaagatcggtgaccatgttgttgtgaaaaaggccggtgacattatt
ccggaagttgccaatgtgctggcagacaagagaaccggtgaagaaaaagatttccacatg
ccaactcattgcccggaatgtgagagtgaattagtccggcttaacggagaagtggctctt
cgttgcataaatccgaaatgcccggctcagatccgtgagggacttattcattttgtctca
agaaatgccatgaatatagaggggcttggagagaaagttatttcccagcttttttcagcc
aatctggtacatgatgtagctgacatttataaattaacccgggaacagctgattggactg
gaaagaatgggtgaaaaatccgttaataacttgcttcaggcgattgaagcttcgaagcaa
aattcgcttgaaagacttcttttcgggcttggaattcgccatgtcggtgcaaaagcagcc
aaaacgcttgcgatggaattcggaacaatggacagactggcgtctgcaagcagagaagag
ctaacagccatcaatgaaattggggagaaaatggctgattccatcgtaacattttttgaa
atggaagaagtcagagaattaatccaggaattaaaagcttccggagtcaatatggaatac
aagggcccagccccggttacacgtacggaatcagaatctttcttttctggtaagacaatc
gtgttaacaggaaaattggcacagcttacaagaaatgaagcaaaggaaagaattgaggct
cttggcggaaatgtagccggaagcgtgagtaagaaaacggatcttgtcattgcaggagaa
gacgctggttcgaaacttacaaaggcagaggagcttggaattgaggtttggaacgaggag
aggctgcttgaagaattaacgaaatag
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integrated database retrieval system
