Blattabacterium sp. (Mastotermes darwiniensis): MADAR_433
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Entry
MADAR_433 CDS
T01642
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
bmm
Blattabacterium sp. (Mastotermes darwiniensis)
Pathway
bmm03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
bmm00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
MADAR_433 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bmm03021
]
MADAR_433 (rpoC)
03400 DNA repair and recombination proteins [BR:
bmm03400
]
MADAR_433 (rpoC)
Enzymes [BR:
bmm01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
MADAR_433 (rpoC)
Transcription machinery [BR:
bmm03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
MADAR_433 (rpoC)
DNA repair and recombination proteins [BR:
bmm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
MADAR_433 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
AER40732
UniProt:
G7SQC3
LinkDB
All DBs
Position
complement(427166..431404)
Genome browser
AA seq
1412 aa
AA seq
DB search
MNRKKNNRFKKITIRLASPESILKESHGEVLKPETINYRTHKPERDGLFCERIFGPVKDY
ECACGKYKRIRYKGIVCDRCGVEVTEKKVRRERMGHISLVVPVVHIWCFRSSPNKIGYLL
GYPSKKLDMIIYYERYVVIQGGIASRKDGTSLQKGDFLTEEEYLSVLQKLPKENQFLEDA
DPNKFIAKMGADCIEDLLNRLDLDVLSFELRNQAKNETSKQRKTEALKRLQIVESFREGK
KNGGNVSWMIIHVLSVIPPELRPLVPLDGGRYAASDMTDLYRRVLIRNNRLKRLIEIKAP
EVILRNEKRMLQEAVDSLFDNSRKVSAVKSEANRPLKSLSDSLKGKQGRFRQNLLGKRVD
YSARSVIVVGPHLKLHECGLPKDMAAELYKPFVIRKLIERGIVKTVKSSKKIIDKRDPMI
WDILENVLKGHPVLLNRAPTLHRLGIQAFQPKLIEGKAIQLHPLVCAAFNADFDGDQMAV
HLPLSPGAILEAQILMLASQNILNPANGSPITVPSQDMVLGLYYMTKPLYSSNNRKVKGE
NLTFYSSEEVEIAYNQNIVELHAVIRVKVSVRKDNNSLSNQLIETTVGRVLFNKVVPKKV
GYINESLTKKSLREIIGKILHFTDVPTTAKFLDDIKELGFYNAFKGGLSFGLGDIIIPDD
KKDMVDHAIKQVDNVKMNYNMGLITNNERYNQVIDVWTNTNSMLTEKVMKHMREDKQGFN
PVYMMLDSGARGSKEQIRQLSGMRGLMAKPQKAGSSSGEIIENPILSNFREGLSILEYFI
STHGARKGLADTALKTADAGYLTRRLVDAAQDVIIKMEDCKTLRGLKIYSLKKNEEIVET
LFDRILGRISLNDVCHPENNQVIVSSGEIIDEKIAYTIEKSGIEFVEVRSPLTCESKMGI
CSKCYGRNLSTGKIVQKGEAVGVIAAQSIGEPGTQLTLRTFHVGGTAGNITESSQIQAKY
DGIIEFEDLKVVQIKNDYGKKVDVVVSRSAEMKLFNQNKSSILMVHNIPYGSTLYVKSGD
KLKEGDKICKWDLYNAVIVAEYSGRISYQHLEQGITYQVEIDEQTGFKEKVITEVRNKNL
IPTLKIIDDNDEELKVYNLPVGAHLMVEDKEEIEVGKILVKVPRKSAKSGDITGGLPRLS
ELFEARNPSNPAVVSEMDGIVSHGKIKRGNREIIVESKTGEIRKYLVKLSNQILVQENDY
VKAGMPLSDGAVTPNDILNIQGARAVQEYLVKEIQEVYRLQGVKINDKHFEVIVLQMMRK
VEVLEVGDTRFLEGNIEYKDDFIEENDRISRMKVVEDPGDSEIFQFGDLISCRDFRNENA
VLKYKKKKLIKTRNAIPATARPILQGITRAALQTKSFISAASFQETTKVLSEAAISSKTD
NLYGLKENVIVGHKIPAGTGLIEYENTISEIF
NT seq
4239 nt
NT seq
+upstream
nt +downstream
nt
atgaatagaaaaaaaaataatagatttaaaaaaattacaattcggttggcatctccagaa
tctatattaaaagaatctcatggagaagttttaaaaccagaaacaatcaattacagaact
cataaacctgagagagatggtcttttttgtgaacgtatttttggtccagtcaaagattat
gaatgtgcttgtggaaaatataaaagaattcgttacaaaggaattgtttgtgatagatgt
ggagttgaagttactgagaaaaaagtgaggagggaacgtatgggacatattagtcttgtt
gttcctgtagttcatatttggtgttttcgttcttcccctaacaaaataggctatttatta
ggttacccatctaaaaagctggatatgatcatttattatgaacggtatgtggtaatacaa
ggtgggatagcatctcgtaaagatggaactagtttacaaaaaggagattttcttacagaa
gaagaatatttatctgttttacaaaaacttccaaaagaaaatcagtttttagaggatgca
gatccaaataaatttatagctaaaatgggagcagattgtatagaggatcttttaaatcgt
ctagatttagatgttttatcttttgaattaagaaatcaagctaaaaatgaaacgtcaaaa
caaagaaaaactgaagcattaaaacgcttacaaatagtagaatcatttagagaaggtaaa
aaaaatggaggaaatgtttcttggatgattattcatgttttatctgttattcctcctgaa
ttacgtcctttggtccctttggatggaggtcgttatgcagcttctgatatgacagatttg
tatcgtcgtgttcttataaggaataatcgtttgaaacgacttatagagattaaagctcct
gaagtgattcttagaaatgaaaagagaatgcttcaagaagctgtagattctctttttgat
aattcaagaaaagtttctgcagtaaagtctgaagctaatcgtcctttaaaatctttatcg
gattctttaaaaggaaaacaaggtcgttttagacagaatcttcttggaaaaagagtagat
tattctgctcgttcagttattgtagtagggcctcatttaaaattgcatgaatgtggactt
cctaaagatatggctgcagagctttataaaccttttgttataagaaaattgattgaaaga
ggaatagtaaaaactgtaaaatcttctaaaaaaattattgataaaagagatcccatgata
tgggatattttggaaaatgtattgaaaggtcatcctgtattgttgaatagagctcctacc
ttacatagattgggtattcaagcttttcaacctaaattaatagaaggaaaagctattcaa
ttacatcctttagtttgtgcagcttttaatgcagattttgatggagatcaaatggccgta
catttgcctttgtctcctggagctattttagaagctcaaatcctgatgttggcttctcaa
aatatattgaatcctgctaatggatcccctataactgttccatctcaagatatggtgttg
ggattgtattacatgactaaaccattatattcctcaaataatagaaaagtaaaaggagaa
aatcttactttttattcttcagaggaggtagaaatagcttacaatcaaaatatagtagaa
ttgcatgccgtaattagagtaaaagtatctgttcgaaaagataataattcattatctaat
caattgatagaaactactgtagggagagtgttatttaataaagttgttcctaaaaaagta
ggatatattaacgaatctcttacgaaaaaatctttaagagagattataggaaaaatttta
cattttacagatgttcctactactgcaaaatttttagatgatattaaagaattaggattc
tataatgcatttaaaggaggtctttcttttggattaggggatattattataccggatgat
aaaaaggatatggttgatcatgctatcaagcaagttgataatgtaaaaatgaattataat
atgggtttaataaccaataatgaacgttacaatcaagttattgatgtatggaccaacaca
aattctatgctcacagaaaaagtaatgaaacatatgcgtgaggataaacagggttttaat
cctgtgtacatgatgttggattcaggagctagaggatctaaggaacaaattcgtcaactt
tctggaatgcggggtttgatggctaaacctcaaaaagcaggatcttctagtggagagatt
atagaaaatccgattttatcaaactttagagaaggactttctattttagaatattttata
tctactcatggagctcgcaaaggattagcagatacagctctaaaaactgcagatgcagga
tatcttacacgacgtttagtcgatgcagcacaggatgtgattatcaaaatggaggattgt
aaaactttgcgtggtttaaaaatttattccttaaaaaaaaatgaagaaatagttgagacg
ttattcgatagaattttaggacgtatatctttaaacgatgtttgtcatcctgaaaataat
caagtaatagtttcttctggagaaataattgacgaaaaaattgcgtatacaattgagaag
tctgggatagaatttgtggaggttcgttctcctctcacttgtgaatctaaaatgggtatt
tgttctaaatgttatggaagaaatctatctacaggaaaaatagttcaaaaaggagaagct
gtaggagttattgctgctcagtctattggagaacctggaactcaattaactcttagaact
tttcatgttgggggaacagctggaaatattacagaatcttcacaaatacaagcaaaatat
gatggaattatagagtttgaagacttgaaagttgtacaaataaaaaatgattatggaaaa
aaagtagatgttgtagtctctcgttctgcagaaatgaaactttttaatcaaaataaatca
tctattttaatggttcataatattccttatggatctactttatatgttaaatctggtgat
aaattaaaagaaggagataagatatgtaaatgggatttgtataatgctgttattgtagca
gaatatagtggaagaatatcttatcaacatttagaacaaggaattacctatcaagtagaa
atagatgaacaaactggatttaaagaaaaagttattacagaagtaaggaataagaatttg
ataccaacattaaaaatcattgatgataatgatgaagaactgaaagtctataatttaccg
gtaggtgctcatttaatggtagaggataaagaagaaatagaagtaggaaaaattttggtg
aaagttcctaggaaatctgctaaatctggagatattacaggtggattgcctcgtttgtct
gaattattcgaagctcgtaatccttctaatccagctgtagtatcagaaatggatggaata
gtaagtcatggaaaaataaaaagagggaatagagaaattattgttgagtctaaaacagga
gaaattagaaaatatctcgttaaactttctaatcagattcttgttcaagagaatgattat
gtaaaggcaggaatgcctttatcagatggggctgttactccaaatgatattttaaatatc
caaggagctagagcagttcaagaatatttagttaaagaaatacaagaagtatatcgtttg
cagggagtaaaaatcaatgataaacattttgaggtaattgttttacaaatgatgcgaaag
gtagaagttctagaagtcggagataccagatttttagaaggaaatattgaatataaagat
gattttatagaagaaaatgatagaatatctagaatgaaagtggttgaagatcctggagat
tctgaaatatttcaatttggagatctgattagttgtagagattttagaaatgaaaatgca
gttttaaaatataaaaagaagaaactgataaaaactagaaatgcgattccagcaacggca
agacctatattacagggaattacaagagcagctttacaaactaaatcttttatatctgca
gcttcttttcaagaaactacaaaagttttaagtgaagcagctattagtagtaaaaccgat
aatttatatggattaaaagaaaatgttattgtaggtcataaaattcctgcaggaactggt
ttaatagaatatgaaaatactatatcagaaattttctga
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