Burkholderia oklahomensis E0147: DM82_542
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Entry
DM82_542 CDS
T03284
Symbol
dnaE
Name
(GenBank) DNA polymerase III, alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
bok
Burkholderia oklahomensis E0147
Pathway
bok03030
DNA replication
bok03430
Mismatch repair
bok03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
bok00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
DM82_542 (dnaE)
03430 Mismatch repair
DM82_542 (dnaE)
03440 Homologous recombination
DM82_542 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bok03032
]
DM82_542 (dnaE)
03400 DNA repair and recombination proteins [BR:
bok03400
]
DM82_542 (dnaE)
Enzymes [BR:
bok01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
DM82_542 (dnaE)
DNA replication proteins [BR:
bok03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
DM82_542 (dnaE)
DNA repair and recombination proteins [BR:
bok03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
DM82_542 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DNA_pol_IIIA_C
RecG_wedge
Nitr_red_assoc
Motif
Other DBs
NCBI-ProteinID:
AIO66527
LinkDB
All DBs
Position
1:632012..635536
Genome browser
AA seq
1174 aa
AA seq
DB search
MSDPRFVHLRVHSEFSIADGIVRLDDIVKAAAADGQGALALTDLGNAFGLVRFYKEARDA
GIKPIAGCDVWITNHDDRDKPSRLLLLVKDKRGYLNLCELLSKAWLTNQYRGRAELDASW
LEGEFAEGLLALSGAQQGDIGLALAAGNEAAARRHAERWAKTFPGGFYIELQRYGQPGAE
AYIQQAVTIAAELKLPVVATHPLQFMTADDFTAHEARVCISEGDILANPRRQKRFTTDQF
FRTQDDMAALFADLPSALANTVEIAKRCNLTLELGKPKLPLFPTPDGMSLDDYLVQLSKE
GLEKRLVQLYPDEAEREAQRDTYCQRLDFECGTIKKMGFPGYFLIVADFINWAKNNGVPV
GPGRGSGAGSLVAYSLGITDLDPLRYNLLFERFLNPERVSMPDFDIDFCQHGRDRVIQYV
KEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLIPFKPGKHVTIADAMK
EEPLLQERYDNEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGKLTDFCPLYTQGDDGG
VVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKENWSLAQVPLDDPASFQ
MLKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPMDLIPSFCARKHGREK
VEYPDMRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAMGKKKPEEMAKHRE
LFREGAAKNGLTAEKADEIFDLMEKFAGYGFNKSHAAAYALLAYYTAWLKAHHPAEFMAA
NMTLAMDDTDKVKILFDDCVVNGLAVLSPDINQSHYRFEPVAEADGKRSRTIRYGLGAIK
GSGQNAIEEILRAREEKPFADLFDFCERIDRRVVNRRTIEALIRAGALDSLHANRAQLLA
SVPLAMEAAEQAAANALQAGLFDIGGEPAHQHALVDEPAWDDKRRLQEEKSALGFYLSGH
LFDAYRDEVRRFVRQKLGELKEGRDKVVAGVIASLRTQMTQRGKMVIALLDDGTGQCEIT
VFNEQFDVNRALFKEDELLIVQGQARNDAFTGGIRFTADSVMDLERARSRYAQAVRMTMN
GNADAAALRRVLEAHVAKPDETPAVDAPAPRGGRDGGRRAAPAIPNGLAVRIAYSNARAQ
GEMRLGDAWRVKPSDALLADLRAAFGGSVVEIVY
NT seq
3525 nt
NT seq
+upstream
nt +downstream
nt
atgtcagatccccgtttcgttcatcttcgcgttcactccgaattctcgattgccgacggc
atcgtgcgtctcgacgatatcgtcaaggcggcggccgcagacggtcagggcgcgctcgcc
ctgaccgacctcggcaacgcgttcggtctcgtccgtttctacaaggaagcccgcgacgcg
ggcatcaagccgatcgccggctgcgacgtctggatcaccaatcacgacgatcgcgacaag
ccgtctcggctgctgctgctcgtcaaggacaagcgcggctacctgaatctctgcgagctg
ctgtcgaaggcgtggctcacgaatcaataccgcggccgcgcggagctcgacgcgagctgg
ctcgaaggcgagttcgccgaagggttgctcgcgctgtcgggcgcgcaacagggcgacatc
ggcctcgcgctcgcggccggcaacgaagcggccgcgcgccgtcacgcggagcgctgggcg
aagacgttccccggcggtttctacatcgaattgcagcgctacggccagccgggcgccgaa
gcgtacatccagcaggcggtgacgatcgccgccgagctgaagctgcccgtcgttgcgacg
catccgctgcagttcatgacggccgacgacttcaccgcgcacgaggcgcgcgtgtgcatc
tcggaaggcgacatcctcgcgaatccgcgtcgccagaagcgcttcacgaccgatcagttc
ttccgcacgcaggacgacatggccgcgctgttcgccgacctgccgtcggcgctcgcgaac
acggtcgagatcgcgaagcgctgtaacctgacgctcgagctcggcaagccgaagctgccg
ctcttcccgacgcccgacggcatgtcgctcgacgactacctcgtgcagctgtcgaaggag
gggctcgagaagcgtctcgtgcagctctatccggacgaggccgagcgcgaagcgcagcgc
gacacgtactgccagcgcctcgatttcgaatgcggcacgatcaagaagatgggctttccg
ggctacttcctgatcgtcgcggacttcatcaactgggcgaagaacaacggcgtgccggtc
ggcccgggccggggctcgggcgcgggctcgctcgttgcatactcgctcggcatcacggac
ctcgatccgctgcgctacaacctgctgttcgagcgcttcctgaatccggagcgggtgtcg
atgcccgacttcgacatcgacttctgccagcacgggcgcgatcgcgtgatccagtacgtg
aaggagaagtacggcgcggacgcggtgtcgcagatcgccaccttcggcacgatggccgcg
aaggcggccgtgcgcgacatcggccgcgtgctcgatctcggctacatgttcaccgacggc
gtcgcgaagctgatcccgttcaagccgggcaagcacgtgacgatcgccgacgcgatgaag
gaagagccgctcctgcaggagcgctacgacaacgaggacgaagtccatcagctcctcgat
ctcgcgcagcgcgtcgagggcctcacgcgcaacgtcgggatgcatgcgggcggcgtgctg
atcgcgcccggcaagctcaccgatttctgcccgctctacacgcagggcgacgacggcggc
gtcgtcagccagtacgacaaggacgacgtcgaagccgtcggcctcgtgaagttcgacttt
ctgggtctgacgacgctcacgatcctcgactgggccgagcggtacatccgccgtctcgat
ccgtcgaaagagaactggtcgctcgcgcaggtgccgctcgacgatcccgcgtcgttccag
atgctcaagaaggcgaacaccgtcgccgtgttccagctggaaagccgcgggatgcagggc
atgctgaaggatgcgcagcccgaccgcttcgaggacatcatcgcgctcgtgtcgttgtac
cgtccgggcccgatggacctgatcccgagcttctgcgcgcgcaagcacgggcgcgagaag
gtcgagtatcccgacatgcgcgtcgaacccgtcctgaaagagacctacggcatcatggtc
tatcaggagcaggtgatgcagatggcgcagatcatcggcggctactcgctcggcggcgcc
gacttgctgcgccgcgcgatgggcaagaagaagcccgaggagatggccaagcatcgcgag
ctgttccgcgagggcgcggcgaagaacggcctgacggccgagaaggccgacgagatcttc
gacttgatggagaagttcgcgggctacggcttcaacaagtcgcacgcggcggcgtatgcg
ctgcttgcgtactacaccgcgtggctgaaggcgcaccatccggccgaattcatggcggcc
aacatgacgctcgcgatggacgacaccgacaaggtgaagatcctgttcgacgactgcgtc
gtcaacggcctcgccgtgctgtcgcccgacatcaatcaatcgcattaccgcttcgagccg
gtcgcggaagccgacggcaagcgctcgcgcacgatccgctacggcctgggcgcgatcaag
ggcagcggccagaacgcgatcgaagagatcctgcgcgcgcgcgaagagaaaccgttcgcc
gatctgttcgacttctgcgagcggatcgaccggcgcgtcgtgaaccgccggacgatcgag
gcgctgattcgcgcgggcgcgctcgattcgctgcacgcgaaccgcgcgcaactgctcgcg
tcggtgccgctcgcgatggaggctgccgagcaggcggccgcgaacgcgctgcaggcaggg
ctcttcgacatcggcggcgagcccgcgcatcagcacgcgctcgtcgacgagcccgcttgg
gacgacaagcgccgcctgcaggaagagaagagcgcgctcggcttctatctgtccggccac
ctgttcgacgcgtaccgcgacgaggtgcgacgcttcgtgcgccagaagctcggcgagctg
aaggaagggcgcgacaaggtggtggcgggcgtgattgcgtcgctgcgcacgcagatgacc
cagcgcggcaagatggtgatcgcgctgctcgacgacggcaccggccaatgcgaaatcacc
gtgttcaacgagcagttcgatgtgaaccgtgcgctcttcaaggaagacgagctgctgatc
gtccaggggcaggcgcgcaacgacgcgttcacgggcgggatccgcttcaccgccgattcg
gtgatggatctcgagcgcgcacgcagccgctacgcgcaggcggtgcggatgacgatgaac
ggcaatgcggatgccgcggcgctgcgccgcgtgctcgaagcgcacgtcgcgaagcctgac
gagacgccggccgtcgatgccccggcgccgcgcggcggccgcgacggcgggcggcgcgcg
gcgcccgcgataccgaacggcctcgccgtgcggatcgcgtacagcaacgcgcgcgcgcaa
ggcgagatgcgcctgggcgacgcctggcgcgtgaagccgagcgacgcgctgctcgcggat
ctgcgcgcggcgttcggcggcagcgtcgtcgagatcgtctactga
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