Bipolaris oryzae: COCMIDRAFT_81195
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Entry
COCMIDRAFT_81195 CDS
T03125
Name
(RefSeq) hypothetical protein
KO
K10610
DNA damage-binding protein 1
Organism
bor
Bipolaris oryzae
Pathway
bor03420
Nucleotide excision repair
bor04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
bor00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
COCMIDRAFT_81195
09124 Replication and repair
03420 Nucleotide excision repair
COCMIDRAFT_81195
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
bor04121
]
COCMIDRAFT_81195
03400 DNA repair and recombination proteins [BR:
bor03400
]
COCMIDRAFT_81195
Ubiquitin system [BR:
bor04121
]
Ubiquitin ligases (E3)
Multi subunit Ring-finger type E3
Cul4 complex
Adoptor protein
COCMIDRAFT_81195
DNA repair and recombination proteins [BR:
bor03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Cul4-DDB2 complex
COCMIDRAFT_81195
TCR (transcription coupled repair) factors
Cul4-CSA complex
COCMIDRAFT_81195
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MMS1_N
CPSF_A
Motif
Other DBs
NCBI-GeneID:
19125819
NCBI-ProteinID:
XP_007682766
JGI:
Cocmi1_81195
UniProt:
W6ZLG7
LinkDB
All DBs
Position
Unknown
AA seq
1116 aa
AA seq
DB search
MAYIAPIHRPSSVRHALKLNFLAPEDDCLVVAKSNRLEFYTHEADGLVLKHSKAIYGKVT
MLQKLRPALSPTDHLFVGTDRFMYFTLSWNAEKKQLQTEKSFASVADNAARESQTGERCH
IDPTGRFMTIEVYEGILTVIPLVQRGKKRKQEADIAHLGDPQPVRLPEMFVRSSAFLRPR
STDDKPKMALLYEDTHAQVKLRLRELTYAGDEVDLQEGETCKSELELGSSHLIPLEEPSH
GLVVIGETSIGYFDDGSGELQTEPLDEATIFVAWERIDAQRFVLADDYGRLYMFMLVLSA
QGRVQSWKLDVIGQTSRASTLVYLDAGYVFVGSHQGDSQVIRIAEKSMEIVQTFSNIAPI
LDFTIMDMGNRSGEGQTNEYSSGQARIVTGSGAYQDGSLRSVRSGVGLEDLGVLGEMEHI
SELFSLKSAASAQYIDTLLVSFVGESRVFRFDSQGEVEEVDEFVSLALDETTLAAANIPQ
GRIVQVTNGRARICDLDGGMITSEWVPTDGKTITAASVNETHVLVSLGGVTIVSLSMADG
LQVVKEKTFGAESQVACVTLPSGTSSTCFVGFWNNSQLAICSLDTLEAVKTVQISDDSVP
RSLLLTQIFPDQPPSLFVALADGNVVTYTFDPSNHELSGRKSIVLGTREATFRALPRGDG
LFNVFATCEHPSLIYASEGRLVYSAVTAEKATTVCPFDSEAYLGSVAIATSQDLRIALVD
TERTTHVQTLKVDETVRRIAYSPNLKAFGLGTIKRILKHGEEIMLSHFKLVDEIQFKELD
TYALNEEELVECVMRCELPDGSGGLAERFVVGTAYIDDQNTTSERGRIIVLEVTPERILK
LVTEIAVKGGCRCLAICQGKIVAALIKTIIVYDFEYRTPSTPDLVKLVSFRCSTAPIDVT
VNGSLIAIADLMKSLVVVEYTKGETGLPDKLVEIARHYQITWATAVAEVDTNMYLESDAE
GNLIVLYRDPNGVTDDDKRRLNISSEMLLGEMVNRIRRIDVLTAADAVIVPKAFVGTVEG
SIYLFGLISPDYQNLLMTLQANLGSLVAAPGDMQFAKFRAFKNSVREEEEPMRFVDGELI
ERFLDVSEEVQSKAIDGLGVELEEVKGLIEALRRLH
NT seq
3351 nt
NT seq
+upstream
nt +downstream
nt
atggcctatatcgcccccattcaccggccaagcagcgtcaggcatgccctaaagctcaac
ttcctggctcccgaagacgactgcctggtggtcgcaaagtcaaatcggctcgaattctat
acacacgaggcagatggattggtcctgaaacattcaaaggccatctatggcaaagtcacc
atgctccagaagctgcgaccagcactatctcccaccgaccacctctttgttggcaccgac
cgcttcatgtattttaccctgtcatggaacgccgaaaagaaacagctccagactgagaag
tcgtttgcgagcgtcgccgataatgcggccagagagtcgcaaacgggcgagagatgtcac
attgatcccactggccgcttcatgactatcgaggtctacgagggcatcctcacagtcata
ccattggtccagagaggaaagaagagaaagcaagaggcggacattgcccatctgggcgat
cctcagccggttcgattgcctgaaatgtttgtccgctcatccgctttcctacgcccgcga
tccacagacgataagcccaagatggctctactttacgaagatacacatgcccaagtcaag
ctgagattacgagaattgacatatgccggtgatgaggtcgacctgcaagagggagaaacc
tgcaagagcgagctggaacttggttcaagccacttgatccctcttgaggaaccatcgcat
ggcctggtagtcattggagagacatcgatcggatactttgatgacgggagcggagagttg
caaacagagccgcttgatgaagcgaccatctttgtggcttgggagcgcatcgacgcccag
cgtttcgtcctcgccgacgactatggtcgtctctacatgttcatgctagtcctaagcgca
caagggagggtacaatcatggaaacttgatgttatcggccagacgtcccgtgcatcgacc
ctggtttacctagacgctggctacgtattcgtgggctcacaccaaggcgactcgcaagtc
atccgaattgccgagaaatcaatggagattgtccaaaccttttccaatattgctcccatt
cttgattttactataatggatatgggcaacagatctggcgagggtcaaaccaacgaatac
tcctctggccaagcacgaatagtgaccggcagtggtgcctatcaagacggtagtctccga
agcgttagaagtggcgttggcctggaagaccttggtgtattgggcgagatggagcacatt
tctgagctattcagcttaaagtcagctgcttctgctcagtacatagatacactgttggtg
agctttgtgggcgaatcgcgcgttttccgatttgattcccagggcgaagtcgaggaagtg
gacgagtttgtctcgctcgccctcgatgagacaacactggctgcagcgaatattccacaa
ggccgcatcgtccaagtcaccaatggccgtgctcgaatctgtgatctggacggtggcatg
atcacatcggaatgggtgccaacagacggcaagacgatcactgccgcctcagtcaacgag
acccatgttctggtatcactgggtggcgtcaccatagtctccctgagcatggccgacggg
ttacaggtggttaaagagaagacgtttggcgctgagagccaggttgcttgcgttaccttg
ccctctggaaccagctccacttgttttgttggcttctggaacaactcacagcttgccata
tgctcactcgatactcttgaggccgtaaaaactgttcaaatatccgacgactctgttccg
cgctcattgctccttacacagatattccctgatcaaccaccatcactttttgttgctttg
gctgatggaaatgttgtcacatacacatttgacccgtcaaaccacgagctttccggaagg
aagagtatcgtgcttggaacacgcgaagctaccttccgcgctctaccacgaggcgatggt
ctctttaacgtgtttgcgacatgtgaacatccctctctgatctacgcgtcagaaggccgc
cttgtatactctgctgtcaccgccgaaaaagcgacaacagtctgcccgttcgattcagaa
gcataccttggttccgttgcgatcgccacatctcaagacctccgcattgcgcttgtagac
accgaaagaactacccacgtacaaacactcaaggttgatgagacggtacggcggatagcc
tactcaccgaatctgaaagcctttggtcttggcacgataaagcgcatactgaagcatgga
gaggagattatgctgagccacttcaagcttgtcgacgaaatacaattcaaagaactcgac
acatatgcgctcaacgaagaagagctggtcgaatgcgtcatgcgttgcgagctaccagac
ggctctggtgggctagcagagcgctttgttgtcggtaccgcatacattgatgatcagaac
acgacatctgaacggggtcgtattatcgtcttggaagtcacacccgagcgcatactcaag
ctcgtcaccgagattgccgtaaaaggcggatgcaggtgcctagctatatgccaaggcaag
attgttgctgcgctcataaagacaatcatcgtgtatgattttgaataccgaactcccagc
acacctgatctcgtcaaacttgtatcattccgatgttcaacagccccaatagacgtcaca
gtgaacggctccttgatcgcgatagcggatctcatgaagtcacttgtcgtagtcgaatac
acaaagggcgaaacgggtcttcccgataagctcgtggaaattgcgcgacattaccagatt
acatgggcgacagccgtggcagaggtagatacgaatatgtatcttgaaagcgatgcagaa
ggtaacctaatcgttttgtaccgcgatccaaacggtgtcaccgatgatgacaagagaagg
ctgaatatcagctccgagatgctactcggcgagatggtgaatcggatacgcaggatagat
gttttgactgccgcggacgcagtcattgtgccaaaggcttttgtcggaactgtcgaaggc
tcaatttacctctttggcctcatatcaccagactaccagaatctcctcatgacgctgcag
gccaaccttggttctctcgttgccgcacccggtgacatgcaattcgccaagttccgtgcg
ttcaagaactcagtgcgtgaagaagaagagcccatgcggtttgtcgatggagagctgatt
gagcggttcttggatgtgagcgaagaagtgcagagcaaggcaattgatggtttaggagtg
gagctggaagaagtaaagggattgattgaagcgttgagacgtctgcattaa
DBGET
integrated database retrieval system
