KEGG   Burkholderia pseudomallei 668: BURPS668_A3112Help
Entry
BURPS668_A3112    CDS       T00481                                 

Gene name
ligD
Definition
(GenBank) DNA ligase D
  KO
K01971  
bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
bpd  Burkholderia pseudomallei 668
Pathway
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:bpd00001]
 Genetic Information Processing
  Replication and repair
   03450 Non-homologous end-joining
    BURPS668_A3112 (ligD)
Enzymes [BR:bpd01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     BURPS668_A3112 (ligD)
DNA repair and recombination proteins [BR:bpd03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     BURPS668_A3112 (ligD)
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif Motif
Other DBs
NCBI-ProteinID: 
UniProt: 
LinkDB All DBs
Position
II:complement(2950885..2954358)
Genome map
AA seq 1157 aa AA seqDB search
MAGKLSVYRSRRRFGETPEPEGARRSPRRTKGAGRAGDESKRRARGERVARRGRAQQPAP
ARRRSALHYVIQEHHARRLHYDFRLELDGTLKSWAIPKGPSLDPSVKRLAVHVEDHPLEY
AAFEGEIPEGHYGAGSVIVWDRGAWTPAGGIAAARAGYRAGKLSFTLDGDKLHGGWALVR
GRGLRDSGGKHEQWLLIKERDGDARDQADYDVLRARPGSVLGGARSGRARRGRAAEPTER
DAAAPKRARASVPKGRAEAKTSGRAPRTVSNGTAGAGKGASKRASKREGTNTGNGARSGK
GSGKGSGKGAGKGGATPRRKRAAAPQSFDVDSADTDSPAARGLALPAGLAARFGLSGAKR
AALPRTLRPQLATLVDAPPPGKDWLYEAKFDGYRVLIRIDRAAASRPIAVHTREGLDWSA
KFAAQLDALARLPVDRGWLDGEAVVLDRAGVPDFQALQNALGAGRSNDVTLFLFDVPFLN
GFDLRGVPLERRRALLAALVAAHASDVLRYSESLAFEAADLLTGACDAGLEGLIGKRRDG
RYVEGRSRSWIKLKCRRRQEFVIGGYTEPAGRRSGFGALLLGVYARAPGDEGDEGERRTR
GAAETRDERRRASHASHASRTSRTSRAPDAGAARAPQARPLALRYVGRVGTGFGERTLRA
LARTLREHETGRMPFADVPRERSGTPVHWVKPVLVAECEFAEWTGDGIVRQASFVGLRED
KPARTIVREQPQSMETEAMNEHADEHTDEHTDARAERRTGGRTRRKARDGGARDAPPLAR
HPKRGVAGSSTRKGARDGEAGKRAAAGSSPSSSPSSSTSPSISASGRTRGGGRSASRDRA
GDADEGANEGANDHAPRERAGAPKVAGVRVSHPGRVIDPHTGTRKLDLVEYWEWIAPWLL
PHLKGRPVSLVRAPADIGGELFFQKHADKLEIPNVALHAGLDPGHEALITIDDVKGLVGA
AQMGTIELHTWNAHVSNIEKPDRAVFDLDPDPSLDWRAVIEAAQLTRALLDELGLVSFCK
TSGGKGLHVVVPLARHAGWDDVKAFAHAVARHMAATLPERFTATMGPRNRKGKIFVDYLR
NNRGASTIAAYSVRARPGLGVSVPIAWDELPDTTGAAQWTLANLHERLDALKHDPWRAYA
HVRQRVTAALRKRLSDG
NT seq 3474 nt NT seq  +upstreamnt  +downstreamnt
atggcgggaaaactcagcgtgtaccgcagcaggcggcgcttcggcgaaacgccggagccc
gagggcgcgcggcggtcgccgcgccgcacgaaaggcgcgggccgcgcgggcgacgaatcg
aagcggcgcgcgcgcggcgagcgcgtcgctcgccgtggccgcgcgcagcagccggcgccg
gcgcgccgcaggtccgcgcttcattacgtgatccaggagcatcacgcgcgccgcttgcat
tacgactttcgtctcgaactcgatggcacgctcaaatcgtgggcgatcccgaaagggccg
agcctcgatccttcggtcaagcggctcgcggtgcacgtcgaggatcatccgctcgaatac
gcggcgttcgagggcgagattccggagggccattacggcgcgggctcggtgattgtctgg
gatcgcggcgcatggacgcccgccggtggcatcgccgccgcgcgcgccggctatcgcgcg
ggcaagctgagcttcacgctcgacggggacaagctgcacggcggctgggcgctcgtgcgc
ggccgcgggctgcgtgacagcggcggcaagcacgagcaatggctgctgatcaaggaacgc
gacggcgacgcgcgcgaccaagcggactacgacgtgctgcgcgcacggccgggcagcgtg
ctcggcggcgcgcggtccgggcgggcgaggcgcgggcgcgcggccgagccgacggagcgc
gacgccgccgcgccgaagcgggcgcgcgcttcagtgccgaaagggcgcgccgaagcgaag
acgagcgggcgtgcgccgcgcaccgtgtcgaacgggactgcgggcgcgggtaagggcgca
agcaagcgtgcaagcaagcgcgagggcacgaataccggaaacggcgcgagaagcggcaag
ggcagcggcaagggcagcggcaagggcgcgggcaagggcggggccacaccgcgccgcaaa
cgcgccgccgcgccgcagtcgttcgacgtcgattcggccgataccgattcacccgcggcg
cgcggcctcgcgttgcccgccgggcttgccgcgcgcttcggcctgagcggcgcgaagcgc
gcggcgctgccgcgcacgttgcggccgcaactggcgacgctcgtcgatgcgccgccgccc
ggcaaagactggctatacgaagcgaagttcgacggctaccgcgtgctgatccggatcgat
cgcgccgcggcgtcccgcccgattgccgtccacacgcgcgaggggctcgactggagcgcg
aaattcgccgcgcagctcgacgcgctcgcgcgcctgccggtcgaccggggctggctcgac
ggcgaggcggtcgtgctcgatcgcgcgggcgtgccggatttccaggcgctgcagaacgcg
ctcggcgccggacgctcgaacgatgtcacgctgttcctgttcgacgtgccgttcctgaac
ggcttcgacctgcgcggcgtgccgctcgaacggcggcgcgcgctgctcgccgcgctcgtc
gccgcgcatgcgagcgacgtgctgcgctactcggagagcctcgcgttcgaggccgccgat
ctgctgacgggcgcgtgcgacgcggggctcgaagggctgatcggcaagcggcgcgatggc
cggtacgtcgaggggcgctcgagatcgtggatcaagctgaagtgccggcgcaggcaggag
ttcgtgattggcggctacacggagccggccggacggcgcagcggattcggcgcgttgctg
ctcggcgtgtacgcccgggcgccgggcgacgagggcgacgagggcgaacgaaggacgcgc
ggcgcggccgaaacgcgcgacgagcggcgtcgtgcatcccacgcatcccacgcatcccgc
acatcccgcacatcccgcgcgcccgatgccggcgcggcgcgcgcaccgcaggcgcggccg
ctcgcgttgcgctacgtcggccgcgtcggcaccggcttcggcgagcgcacgcttcgcgcg
ctcgcgcggacgctgcgcgagcacgagaccggtcggatgccgttcgcggacgtgccgcgc
gagcgcagcggcacgccggttcactgggtgaagcccgtgctcgtcgccgaatgcgaattc
gcggaatggacgggcgacggcatcgtccggcaggcgtcgttcgtcgggctgcgcgaagac
aagccggcgcgcacgatcgttcgcgagcaaccgcaatccatggagacggaagccatgaat
gaacacgctgacgaacatacggatgaacataccgatgcacgcgccgaacgtcgcaccggc
ggacgcacgcggcgcaaagcacgtgacggcggcgcgcgcgacgcgccgccgcttgcccgc
catccgaagcgcggcgttgcgggatcgtccacgcgcaagggcgcgcgggacggggaggcg
ggcaagcgcgccgccgcgggatcgtcgccttcgtcttcaccgtcgagttcgacttcgcct
tcgatttcggcgtcagggcgcacgcgcgggggcggtcgttccgcctcgcgcgatcgagcc
ggcgatgcggacgaaggtgcgaacgaaggcgcgaacgatcacgcgccgcgcgagcgcgcc
ggcgcgccgaaggtggcgggcgtgcgcgtctcgcatcccggccgcgtgatcgatccgcac
acgggcacgcgcaagctcgacctcgtcgaatactgggaatggatcgcgccgtggttgctg
ccgcatctgaagggccggccggtgtcgctcgtgcgcgcgcccgccgacatcggcggcgag
ctgttcttccagaagcacgcggacaagctggagattccgaacgtcgcgctgcacgcgggg
ctcgacccgggccatgaggcgctcatcacgatcgacgatgtgaaggggctcgtcggcgcc
gcgcaaatgggcacgatcgagctgcacacatggaacgcgcacgtgtcgaacatcgagaag
ccggaccgcgcggtgttcgacctcgacccggacccgtcgctcgactggcgcgcggtgatc
gaggctgcgcagctcacgcgcgcgctgctggacgagctcggcctcgtgtcgttctgcaag
acgagcggcggcaaggggctgcacgtcgtcgtgccgctcgcgcgccatgcgggctgggac
gacgtgaaggcgttcgcgcacgcggtggcgcggcacatggcggcgaccctgcccgagcgc
ttcaccgcgacgatggggccgcgcaaccggaagggcaagatcttcgtcgactatctgcgc
aacaaccgcggcgcgagcacgatcgccgcgtactcggtgcgcgcgaggccggggcttggc
gtatcggtgccgatcgcatgggacgaactgccggatacgacgggcgccgcgcaatggacg
ctcgcgaacctgcacgagcgtctcgacgcgctgaagcacgacccgtggcgcgcctatgcg
catgtgcggcaacgcgtgacggcggcgttgcggaagcggctgagcgatgggtag

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