KEGG   Burkholderia pseudomallei NCTC 13179: BBK_4987Help
Entry
BBK_4987          CDS       T02894                                 

Gene name
ligD
Definition
(GenBank) DNA ligase D
  KO
K01971  
bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
bpk  Burkholderia pseudomallei NCTC 13179
Pathway
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:bpk00001]
 Genetic Information Processing
  Replication and repair
   03450 Non-homologous end-joining
    BBK_4987 (ligD)
Enzymes [BR:bpk01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     BBK_4987 (ligD)
DNA repair and recombination proteins [BR:bpk03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     BBK_4987 (ligD)
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif Motif
Other DBs
NCBI-ProteinID: 
LinkDB All DBs
Position
2:complement(1824429..1827914)
Genome map
AA seq 1161 aa AA seqDB search
MAGKLSVYRSRRRFGETPEPEGARRSPRRTKGTGRAGDESKRRARGDAAASSRGERAARR
GRAQQPARGRSALHYVIQEHHARRLHYDFRLELDGTLKSWAIPKGPSLDPSVKRLAVHVE
DHPLEYAAFEGEIPEGHYGAGSVIVWDRGAWTPAGGVAAARAGYRAGKLSFTLDGDKLHG
GWALVRGRGLRDSGGKHEQWLLIKERDGDARDEADYDVLRARPGSVLGGARSARARRGRA
AEPTERDAAAPKRARASVPKGRAEAKTSGRAPRTVSNGTAGAGKGASERASKREGTNTGN
GARSGKGSGKGAGEGVATSRRKRAAAPQSSDVDSADTDSPAARGLALPAGLAARFGLSGA
KRAALPRTLRPQLATLVDAPPPGKDWLYEAKFDGYRVLIRIDRGAASRPIAVYTREGLDW
SAKFAAQLDALARLPVDRGWLDGEAVVLDRAGVPDFQALQNALGAGRSNDVTLFLFDVPF
LNGFDLRGVPLERRRALLAALVAAHASDVLRYSESLAFEAADLLTGACDAGLEGLIGKRR
DGRYVEGCSRSWIKLKCRRRQEFVIGGYTEPAGRRSGFGALLLGVYARAPGDEGDEGERR
TRGAAETRDERRRASHASHASRTSRTSRAPDAGAARAPQARPLALRYVGRVGTGFGGRTL
RALARTLHEHETGRMPFADVPRERSGTPVHWVKPVLVAECEFAEWTGDGIVRQASFVGLR
EDKPARTIVREQPQSMETEAMNEHADEHTDEHTDARAERRTGGRTRRKARDGGARDAPPL
ARHPKRGDAGSSARKGARDGEAGKRAAAGSSPSSSPSSSTSTSPSISASGRTRGGGRSAS
RDRAGDADEGANEDANDHAPRERAGAPKVAGVRVSHPGRVIDPHTGTRKLDLVEYWEWIA
PWLLPHLKGRPVSLVRAPADIGGELFFQKHADKLEIPNVALHAGLDPGHEALITIDDVKG
LVGAAQMGTIELHTWNAHVSNIEKPDRAVFDLDPDPSLDWRAVIEAAQLTRALLDELGLV
SFCKTSGGKGLHVVVPLARHAGWDDVKAFAHAVARHMAATLPERFTATMGPRNRKGKIFV
DYLRNNRGASTIAAYSVRARPGLGVSVPIAWDELPDTTGAAQWTLANLHERLDALKHDPW
RAYAHVRQRVTAALRKRLSDG
NT seq 3486 nt NT seq  +upstreamnt  +downstreamnt
atggcgggaaaactcagcgtgtaccgcagcaggcggcgcttcggcgaaacgccggagccc
gagggcgcgcggcggtcgccgcgccgcacgaaaggcacgggccgcgcgggcgacgaatcg
aagcggcgcgcgcgcggcgatgcggcggcgtcgagccgcggcgagcgcgccgctcgccgt
ggccgcgcgcagcagccggcgcgcggcaggtccgcgcttcattacgtgatccaggagcat
cacgcgcgccgcttgcattacgactttcgtctcgaactcgacggcacgctcaaatcgtgg
gcgatcccgaaagggccgagcctcgatccttcggtcaagcggctcgcggtgcacgtcgag
gatcatccgctcgaatacgcggcgttcgagggcgagattccggaaggccattacggcgcg
ggctcggtgattgtctgggatcgcggcgcatggacgcccgccggtggcgtcgccgccgcg
cgcgccggctatcgcgcgggcaagctgagcttcacgctcgacggggacaagctgcacggc
ggctgggcgctcgtgcgcggccgcgggctgcgtgacagcggcggcaagcacgagcaatgg
ctgctgatcaaggaacgcgacggcgacgcgcgcgacgaagcggactacgacgtgctgcgc
gcacggccgggcagcgtgctcggcggcgcgcggtccgcgcgggcgaggcgcgggcgcgcg
gccgagccgacggagcgcgacgccgccgcgccgaagcgggcgcgcgcttcagtgccgaaa
gggcgcgccgaagcgaagacgagcgggcgtgcgccgcgcaccgtgtcgaacgggactgcg
ggcgcgggtaagggcgcaagcgagcgtgcaagcaagcgcgagggcacgaataccggaaac
ggcgcgagaagcggcaagggcagcggcaagggcgcgggcgagggcgtggccacatcgcgc
cgcaaacgcgccgccgcgccgcagtcgtccgacgtcgattcggccgataccgattcaccc
gcggcgcgcggcctcgcgttgcccgccgggcttgccgcgcgcttcggcctgagcggcgcg
aagcgcgcggcgctgccgcgcacgttgcggccgcaactggcgacgctcgtcgacgcgccg
ccgcccggcaaagattggctatacgaagcgaagttcgatggctaccgcgtgctgatccgg
atcgatcgcggcgcggcgtcccgcccgattgccgtttacacgcgcgaggggctcgactgg
agcgcgaaattcgccgcgcagctcgacgcgctcgcgcgcctgccggtcgaccggggctgg
ctcgacggcgaggcggtcgtgctcgatcgcgcgggcgtgccggatttccaggcgctgcag
aacgcgctcggcgccggacgctcgaacgatgtcacgctgttcctgttcgacgtgccgttc
ctgaacggcttcgacctgcgcggcgtgccgctcgaacggcggcgcgcgctgctcgccgcg
ctcgtcgccgcgcatgcgagcgacgtgctgcgctactcggagagcctcgcgttcgaggcc
gccgatctgctgacgggcgcgtgcgacgcggggctcgaagggctgatcggcaagcggcgc
gatggccggtacgtcgaggggtgctcgagatcgtggatcaagctgaagtgccggcgcagg
caggagttcgtgattggcggctacacggagccggccggacggcgcagcggattcggcgcg
ttgctgctcggcgtgtacgcccgggcgccgggcgacgagggcgacgagggcgaacgaagg
acgcgcggcgcggccgaaacgcgcgacgagcggcgtcgtgcatcccacgcatcccacgca
tcccgcacatcccgcacatcccgcgcgcccgatgccggcgcggcgcgcgcaccgcaggcg
cggccgctcgcgttgcgctacgtcggccgcgtcggcaccggcttcggcgggcgcacgctt
cgcgcgctcgcgcggacgctgcacgagcacgagaccgggcggatgccgttcgcggacgtg
ccgcgcgagcgcagcggcacgccggttcactgggtgaagcccgtgctcgtcgccgaatgc
gaattcgcggaatggacgggcgacggcatcgtccggcaggcgtcgttcgtcgggctgcgc
gaagacaagccggcgcgcacgatcgttcgcgagcaaccgcaatccatggagacggaagcc
atgaatgaacacgctgacgaacatacggatgaacataccgatgcacgcgccgaacgtcgc
accggcggacgcacgcggcgcaaagcacgtgacggcggcgcgcgcgacgcgccgccgctt
gcccgtcatccgaagcgcggcgatgcgggatcgtccgcgcgcaagggcgcgcgggacggg
gaggcgggcaagcgcgccgccgcggggtcgtcgccttcgtcttcaccgtcgagttcgact
tcgacttcgccttcgatttcggcgtcagggcgcacgcgcgggggcggtcgttccgcctcg
cgcgatcgagccggcgatgcggacgaaggcgcgaacgaagacgcgaacgatcacgcgccg
cgcgagcgcgccggcgcgccgaaggtggcgggcgtgcgcgtctcgcatcccggccgcgtg
atcgatccgcacacgggcacgcgcaagctcgacctcgtcgaatactgggaatggatcgcg
ccgtggctgctgccgcatctgaagggccggccggtgtcgctcgtgcgcgcgcccgccgac
atcggcggcgagctgttcttccagaagcacgcggacaagctggagattccgaacgtcgcg
ctgcacgcggggctcgacccgggccatgaggcgctcatcacgatcgacgatgtgaagggg
ctcgtcggcgccgcgcaaatgggcacgatcgagctgcacacgtggaacgcgcacgtgtcg
aacatcgagaagccggaccgcgcggtgttcgacctcgacccggacccgtcgctcgactgg
cgcgcggtgatcgaggccgcgcagctcacgcgcgcgctgctggacgagctcggcctcgtg
tcgttctgcaagacgagcggcggcaaggggctgcacgtcgtcgtgccgctcgcgcgccat
gcgggctgggacgacgtgaaggcgttcgcgcacgcggtggcgcggcatatggcggcgacc
ctgcccgagcgcttcaccgcgacgatggggccgcgcaaccggaagggcaagatcttcgtc
gactatctgcgcaacaaccgcggcgcgagcacgatcgccgcgtactcggtgcgcgcgagg
ccggggcttggcgtatcggtgccgatcgcatgggacgaactgccggatacgacgggcgcc
gcgcaatggacgctcgcgaacctgcacgagcgtctcgacgcgctgaagcacgacccgtgg
cgcgcctatgcgcatgtgcggcaacgcgtgacggcggcgttgcggaagcggctgagcgat
gggtag

DBGET integrated database retrieval system