Butyrate-producing bacterium SS3/4: CK3_03440
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Entry
CK3_03440 CDS
T02611
Name
(GenBank) excinuclease ABC, A subunit
KO
K03701
excinuclease ABC subunit A
Organism
bprs
Butyrate-producing bacterium SS3/4
Pathway
bprs03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bprs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CK3_03440
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bprs03400
]
CK3_03440
DNA repair and recombination proteins [BR:
bprs03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CK3_03440
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
CK3_03440
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrA_inter
UvrA_DNA-bind
ABC_tran
SMC_N
AAA_21
AAA_29
AAA_16
nSTAND1
RsgA_GTPase
AAA_23
AAA_22
AAA_25
AAA_33
NACHT
DnaJ_CXXCXGXG
cobW
Viral_helicase1
BCA_ABC_TP_C
Motif
Other DBs
NCBI-ProteinID:
CBL40192
UniProt:
D7GQW7
LinkDB
All DBs
Position
356733..359582
Genome browser
AA seq
949 aa
AA seq
DB search
MPKQYIKIRGANEHNLKNISLDIPRNELVVLTGLSGSGKSSLAFDTIYAEGQRRYMESLS
SYARQFLGQMEKPDVESIEGLSPAISIDQKSTNRNPRSTVGTVTEIYDYMRLLYARIGIP
HCPKCGREIRKQTVDQMVDQIMTLPERTKIQLLAPMVRGRKGRHEKVLEQAKRSGYVRVM
IDGNLHELSEEITLEKNIKHNIEIVVDRLVVKPGIEKRLTDSIETVMKLSDGLMIVDVTG
GEPINFSQSFSCPDCGISIEEVEPRSFSFNNPFGACPDCFGLGYKMKFDEDLMIPDKSLS
INEGAIVVLGWQSCAKPGSFSRAILDALAAEYHFDLDTPFKDYPKEIHDILIYGTGGKEV
KVHYTGQRGTGVYDVAFEGLIENVNRRYRETFSQASKAEYESFMRITPCTTCHGQRLKQS
SLAVTVGGLNIYEATNMSIVKFREFIDDLKLSEMQKMIGEQILKEIRARISFLIDVGLDY
LSLSRATGTLSGGEAQRIRLATQIGSGLVGVAYILDEPSIGLHQRDNDKLLKTLEHLRDL
GNSVIVVEHDEDTMRAADCIVDIGPGAGEHGGNVVAVGTAAQIMKCKESITGAYLSGRIK
IPVPKERRSPTGWIKIRGARENNLKNIDVDVPLGIMTCVTGVSGSGKSSLINEILYKALA
KKLNRARTIPGDHDGIDGVEQLDKIIAIDQSPIGRTPRSNPATYTGVFDLIRDLFAATTD
AKAKGYSKGRFSFNVKGGRCEACSGDGIIKIEMHFLPDVYVPCEVCGGKRYNRETLEVKY
KGKSIYDVLNMTVEEALKFFENVPSIARKIATLNDVGLSYIRLGQPSTELSGGEAQRIKL
ATELSRRGTGKTIYILDEPTTGLHFADVHKLVEILRKLSEGGNTVVVIEHNLDVIKTADY
IIDMGPEGGDRGGTVIAKGTPEEIVKVPESYTGQYVKRYLENGDAGSDE
NT seq
2850 nt
NT seq
+upstream
nt +downstream
nt
atgccgaagcaatatataaaaatacgaggtgccaacgagcacaacttaaaaaatatttcc
ctggatatcccaagaaatgagctggtggtcctgaccggactttccggatcgggaaaatcc
tccctggcatttgatacgatctacgcggagggacagagacgctatatggagtctctgtcc
tcctatgcgcgtcagttcttaggccagatggaaaagccggatgttgagagcatcgaggga
ctttccccggcgatctccatcgaccagaaatccacgaaccgcaacccgcgttccactgtg
ggaaccgtgacggagatctacgactatatgcgtcttctgtacgcgaggatcggtatcccc
cactgcccgaagtgcggcagggagatccggaaacagaccgtggaccagatggtggaccag
atcatgacattgccggagcggacgaaaatccagcttttagcgccaatggtccgtggaaga
aaaggacgtcatgagaaggttctggaacaggcgaaacgcagcggttacgtccgtgtgatg
atcgacggaaatctacatgagctgtcagaagaaatcacgctggagaagaatatcaagcac
aatatcgagatcgttgtggaccgtctcgttgtgaagcctgggatcgagaaacgtctgacg
gactccatcgagactgtgatgaagctgtctgatggtctgatgatcgtggacgtgacgggc
ggcgagccgatcaacttcagccagagcttttcctgcccggactgcgggatcagcatcgag
gaggtggagccgcgaagcttctccttcaataacccgttcggcgcctgcccggactgtttc
ggtctgggatataagatgaaatttgatgaagatctgatgatcccggataagtccttgagt
atcaatgagggagcaatcgtcgttctcggctggcagtcctgcgcgaagccgggaagcttt
tcaagggcgatcttagatgccctggcggcagagtatcactttgatcttgatactccgttc
aaagattatccgaaggagatccatgatatcctgatctacggaaccggcggaaaggaagta
aaggtccactatacaggacagaggggaaccggtgtttatgacgtggcctttgagggtctg
atcgagaacgtaaaccgccgttaccgggagacattctcccaggccagcaaggcagagtac
gagagctttatgcggatcacaccgtgtaccacctgtcatggacagcgcttaaagcagtct
tctctggcggtgacagtaggtggactgaatatttacgaagctacgaatatgtccatcgta
aaattcagggagtttatcgatgatctgaagctatccgagatgcagaagatgatcggtgaa
cagattttaaaggaaatccgggcgaggatcagcttcctgatcgacgtgggactggattat
ctgtccttatcccgggcgaccggtaccctttccggcggcgaggcacagcggatccgtctg
gcgacccagatcggctccggacttgtgggggttgcctatatcctcgatgagccgagtatc
ggactgcaccagagagataacgataagctgttgaaaactctggaacacctgcgggatctc
ggaaacagtgtgatcgtcgtggaacacgatgaggatacgatgcgggcggcagactgtatc
gtggatatcggtccgggggccggggaacacggtggaaatgtggtcgctgtgggaacggca
gcccagatcatgaagtgtaaagaatcgatcaccggtgcgtatttgagcggacggatcaaa
attccggtgccgaaggagagaagaagcccaacgggctggatcaaaatccgcggcgcgagg
gagaataacctgaaaaatatcgatgtggatgtgccacttggaattatgacctgcgtgacc
ggtgtgtcgggatcgggaaagagctccctgatcaacgagatcctctataaggcgctggcg
aaaaagctgaaccgtgcccggacgatcccgggagatcacgacggaatcgatggtgtggaa
cagctggataagatcatcgccatcgaccagtccccgatcggaagaacgccgagatcaaac
ccggcgacctacactggtgtgtttgacctgatccgtgatctttttgcagcgaccaccgat
gcgaaggcgaagggatactcaaagggacggttcagcttcaacgtgaagggcggtcgatgc
gaggcctgcagcggtgacggaatcatcaagatcgaaatgcatttccttccggatgtctat
gtgccctgcgaggtctgcggcggaaagcggtacaaccgtgagactctggaagtgaagtat
aagggaaagagcatttacgatgtgctgaatatgaccgtggaggaggcgctaaagttcttt
gagaatgtgccgtctatcgcgagaaagattgcgacattgaacgatgtgggactttcctat
atccgtctcggacagccctcaacggagctttccggcggcgaggcgcagcggatcaagctc
gccacagagctttccagacgcggaaccggaaaaacgatctatattcttgatgagccgacg
acaggactccactttgcggatgtccataagctggtggagatcttaagaaagctttccgaa
ggtggaaatacggtggttgtgatcgagcacaatctggatgtgatcaagaccgcggattat
attatcgacatgggaccggaaggcggagaccgcggcggtaccgtgatcgcgaaaggaaca
ccggaggagatcgtgaaggttccggagtcctatacggggcagtatgtcaagcggtatctt
gagaacggagatgccggttcagacgagtaa
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