Burkholderia pseudomallei A79A: X996_141
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Entry
X996_141 CDS
T03498
Symbol
rpoN
Name
(GenBank) RNA polymerase sigma-54 factor
KO
K03092
RNA polymerase sigma-54 factor
Organism
bpso
Burkholderia pseudomallei A79A
Pathway
bpso02020
Two-component system
bpso02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
bpso00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
X996_141 (rpoN)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
X996_141 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bpso03021
]
X996_141 (rpoN)
Transcription machinery [BR:
bpso03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
X996_141 (rpoN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
DUF2344
HTH_IclR
HTH_38
HTH_Crp_2
HTH_23
TRF
Motif
Other DBs
NCBI-ProteinID:
AIV95462
LinkDB
All DBs
Position
1:181857..183365
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AA seq
502 aa
AA seq
DB search
MKASLQLRLSQHLALTPQLQQSIRLLQLSTLELQQEVATAIAQNPLLENDDDWIASPLRV
AADGSVIAQTPASSAPEPMAGAPNGTAATNERTERDETAGVDEYDSYSADGGDASQWNLD
DFGRSPAASDDDDLPPMQIHETSTSLRDHLMAQLRVTQASPRDRALVTFLIESLDDDGYL
SASLEEVLADLPAELEVDVDELNAALALVHSFDPAGVGARSASECLKLQLLRLDPSPTRA
LALDIVSQHLELLAARDFTRLRKQLKATDDALRDAHALIRSLEPFPGAAYGKAEADYVVP
DIIVKKAGQNWQAELNPEVVPKLRINNLYANILRNSRGDPSAGSLKQQLQEARWLIKNIQ
QRFETILRVAQAIVERQKNFFAHGEIAMRPLVLREIADTLGLHESTVSRVTTGKYMLTPF
GTLEFKYFFGSHVSTDTGGAASSTAIRALIKQLIGAEDPKSPLSDSRIAELLAEQGFVVA
RRTVAKYREALKIPAVNLRKSL
NT seq
1509 nt
NT seq
+upstream
nt +downstream
nt
atgaaagccagtcttcaacttcgcctgtcgcagcatctcgcgctcacgccccagcttcag
cagtcgatccggctgctgcaactgtcgacgctcgaactgcaacaggaagtcgcgacggcg
atcgcgcagaacccgctgctcgagaacgacgatgactggatcgcgagcccgttgcgcgtc
gcggccgacggctcagtgatcgcgcagacgcccgcgtcgtccgcgcccgagccgatggcg
ggcgcgccgaacggcacggctgcgaccaatgagcgcaccgagcgcgacgaaaccgccggc
gtcgacgaatacgacagctattcggccgacggcggcgacgcgagccagtggaacctcgac
gacttcggccgctcgcccgccgcgtccgacgacgacgatctgccgccgatgcagatccac
gagacgtcgacgtcgctgcgcgatcatctgatggcgcagttgcgcgtcacgcaggcgagc
ccgcgcgatcgcgcgctcgtcacgttcctgatcgaatcgctcgacgacgacggctacctg
agcgcgtcgctcgaggaagtgctcgccgatctgccggcggagctcgaggtcgacgtcgac
gaactgaacgcggcgctcgcgctcgtgcacagcttcgatccggcgggcgtcggcgcgcgc
tccgcgtccgaatgcctgaagctgcagttgctgcgcctggatccgtccccgacgcgcgcg
ctcgcgctcgatatcgtgtcgcagcatctggagctgctcgccgcgcgcgatttcacgcgc
ctgcgcaagcaactgaaggcgaccgacgacgcgctgcgcgacgcgcacgcgctgatccgc
tcgctcgagccgttccccggcgcggcgtacggcaaggccgaagccgattacgtggtgccc
gacatcatcgtgaagaaggccggccagaactggcaggcggaactcaatccggaagtggtg
ccgaagctgcggatcaacaatctttacgcgaacatcctgcgcaacagccggggcgatccg
agcgcgggatcgctgaagcaacagcttcaggaagcgcgctggctgatcaagaacattcag
cagcggttcgagacgatcctgcgcgtcgcgcaggcgattgtcgagcgtcagaagaatttc
ttcgcgcacggcgaaattgcgatgcgccccttggttttgcgggaaatagctgatacgctg
ggcctacacgagtcgactgtctcccgtgtgacaaccggcaagtacatgctgaccccgttc
ggcacacttgaatttaagtacttcttcggatcgcacgtatcgacagacaccggaggtgcc
gcgtcgtcgacagcgatccgcgccctcatcaaacaactgataggagccgaagaccccaaa
tcccctctttcggacagtcgcatagccgagctgctagcggaacaagggttcgtggtcgcg
cgccgcacggttgccaaatatcgcgaagccctcaagatcccggcggtgaatctgcgcaag
tctctgtag
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