KEGG   Paraburkholderia phenoliruptrix: BUPH_02252Help
Entry
BUPH_02252        CDS       T02300                                 

Definition
(GenBank) DNA ligase
  KO
K01971  
bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
bpx  Paraburkholderia phenoliruptrix
Pathway
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:bpx00001]
 Genetic Information Processing
  Replication and repair
   03450 Non-homologous end-joining
    BUPH_02252
Enzymes [BR:bpx01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     BUPH_02252
DNA repair and recombination proteins [BR:bpx03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     BUPH_02252
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif Motif
Other DBs
NCBI-ProteinID: 
UniProt: 
LinkDB All DBs
Position
1:complement(2021039..2023993)
Genome map
AA seq 984 aa AA seqDB search
MNDRLDLYNRKRRFDETPEPAGTRPAKKRGSRRAARHEADEGLSYVIQEHHARRLHYDFR
LELNGALLSWAVPKGPCLDPSVKRLAVHVEDHPVEYGSFEGEIPPGNYGAGTVIVWDRGT
WEPVGGAAEAARGYRAGKLKFHLHGEKLHGGWTLVRSHMRGDADKEQWLLIKERDDEARD
ESEYDVLEQRPGSVLSGQAAPAAQGKRGKQAASGKSGTASVRGDPKRPDIVATRSSESLR
ELAASPAIEGAVKAKLPVALKPQLATLVDATPPGDDWSYEIKFDGYRVLARIDASAKAHQ
VQVFTRAGNDWTAKFGKQVKAFGQLGLDSAWLDGEAVVLDENGVPNFQALQNAFDSNRPQ
DIVVYLFDLPFLNGYDLRGVPLQQRRAILRALLEPVDDSVLRFSNDFEFSAEDLLKSACD
MALEGIIGKRRDSGYMSGRSATWIKLKCRRRQEFVIGGYSEPSGSRAAFGALLLGVHDSK
GKLQYAGRVGTGFDAALLRSVKKELDAHETKRMPFASVPRERSRTPVHWVEPVLVAECNF
AEWTSEGIVRQASFVSLRKDKPARQIVKEAPRKGDDVQQQTDIEADAAPKKRAAGGGAAA
GVGDAGSRSASKKSAAKGTGKATVKAAEKETGDKQAKATAQAEAQPAAKTAAKTAAKTAS
RSGGSPKRSAAGETASPPATSRANKTSSPTEVAGVRISHPDRVIDKSTGARKIDLVQYYE
SVAPWMLPHLVDRPVSLVRAPEDIGGELFFQKHTQKLSIPNITQHPGLDPGHPPLLTVDS
AKALVGAAQMGTIEFHTWNGVASNIEKPDRVVFDLDPDPSLGWDRMIEAALLTRSLLEEL
GLTSFCKTSGGKGLHVVVPLSKHAGWDEVKDFSQAVAQHMASTLPKYFSAKMGAQNRKQK
IFVDYLRNNRGSSTVAAFSARARPGLGVSVPLAWDELAQTTGGAQWNIENLHERLADLKS
DPWADYAKTRQRITAAMRKRLSGA
NT seq 2955 nt NT seq  +upstreamnt  +downstreamnt
atgaatgacagactcgacctctacaaccgcaagcgccgcttcgacgaaacgccggagccc
gcgggcacccgtccggcgaagaagcgcggcagccggcgcgcggcgcgccacgaagccgac
gagggcctgtcgtatgtcattcaggagcatcacgcgcggcgtctgcattatgacttccgg
ctcgaactgaacggcgcgctgctgtcatgggcggtgccgaaagggccgtgtctggatcct
tcagtgaagcggcttgccgtgcatgtggaagaccatcccgtggaatacggctcgttcgaa
ggcgagatcccgccaggcaactacggcgcgggcacggtcatcgtttgggatcgcggcacg
tgggagccggtcggcggtgcggccgaagcagcgcgcggttaccgcgccggcaagctcaag
tttcacctgcacggcgagaagctgcacggcggctggacgctcgtgcgcagccacatgcgc
ggcgacgcggacaaggagcagtggctgctcatcaaggagcgcgatgacgaagcgcgcgac
gagagcgaatacgacgtcctcgagcaacggccaggcagtgtgctgagcggccaggcagcg
cctgccgcgcaaggaaaacgcggcaagcaggcggcctcaggcaaaagcggcacagcgtcg
gtgcgcggcgatccaaagcgcccggacatcgtcgccacgcgcagcagcgagtcgttgcgc
gaactggccgcgtcgcccgcgatagaaggcgcggtgaaggcgaaactgcccgtcgcgctc
aagccgcaactcgccacgctcgtcgacgccacgccgcccggcgacgactggtcgtatgaa
atcaagttcgacggctatcgcgtgctggcccgcatcgacgcaagcgcgaaagcgcatcag
gtgcaggtgttcacgcgcgcgggcaacgactggacggcgaaattcggcaagcaggtcaag
gcgttcgggcagctcgggctcgacagcgcgtggcttgacggcgaagcggtggtgctggac
gagaacggcgtgccgaacttccaggcactgcaaaacgccttcgattccaaccgtccgcaa
gacattgtcgtgtatctgttcgatctgccgtttctcaacggctacgacttgcgcggcgtg
ccgctgcagcagcgccgcgcgattctgcgtgcgctgctcgaaccggtcgacgacagcgtg
ctgcgcttttcgaacgatttcgagttcagcgccgaggacctcctgaaaagcgcctgcgac
atggcgctcgaaggcatcatcggcaagcggcgcgacagcggctatatgtccggccgctcg
gccacgtggatcaaactgaagtgccggcggcgccaggagttcgtgatcggcggctattcg
gagccgtcgggcagccgcgcggcgttcggcgcgctgctgctcggcgtgcatgacagcaag
ggcaaactgcagtatgccggccgcgtcggcaccggcttcgacgccgcgttgctgcgctcg
gtgaagaaggaactcgatgcgcacgaaacgaagcgcatgccgttcgcgagcgtgcctcgc
gagcgcagccgcacgccggtgcattgggtcgagccggtgctcgtcgcggaatgcaatttc
gccgaatggacgagcgagggtatcgtgcggcaggcgtcgttcgtgagtctgcgcaaagac
aagccggcgcgccagatcgtcaaggaagcaccacgcaaaggggacgacgtgcaacagcaa
accgatatcgaagccgacgcggcgccgaaaaaacgcgctgcgggcggcggggcggcagca
ggcgtgggcgatgccggctcgcggagcgcgagcaagaagagcgccgcgaaaggaaccggc
aaagcaaccgtgaaagcagcagaaaaggaaacgggggataagcaggcgaaagccacggct
caagccgaggcgcaacctgcggctaagaccgccgctaaaaccgccgctaaaaccgcgtcc
aggtccggcggctcaccgaaacgcagcgcggccggcgaaaccgcgagcccacccgccacg
tcccgcgcgaacaaaacctcgtcgccgacggaagtcgcaggtgtccgcatatcgcatccg
gaccgcgtgatcgacaaaagcaccggtgcgcgcaagatcgatctcgtgcagtactacgaa
tcggttgcgccatggatgttgccgcatctggtcgaccggcccgtgtcgctcgtgcgtgcg
ccggaggacatcggcggcgagctgttctttcagaagcacacgcagaagctctcgatcccc
aacatcacgcagcaccccggactcgaccctgggcatccgccgcttctcaccgtggacagc
gcgaaggcgcttgtcggtgcggcgcaaatgggcacgatcgaatttcacacctggaacggc
gtggcgtcgaatatcgagaagcccgaccgcgtcgtgttcgacctggaccccgatccgtcg
ctcggctgggacaggatgatcgaggccgcgctgctcacgcgctcgctgctggaagaactc
ggcctcacgtcgttctgcaagacgagcggcggcaagggcttgcacgtcgtcgtgccgctg
tcgaagcacgcgggctgggacgaggtgaaggacttctcgcaggccgtcgcgcagcacatg
gcgagcacgctgcccaaatacttcagcgcgaagatgggcgcgcagaaccgcaagcagaaa
attttcgtcgactatctgcgcaataaccgcggctccagcaccgtcgctgcgttttcggcg
cgggcgcggccgggactcggcgtgtcggtgccgctcgcgtgggacgaactcgcacagacc
actggcggcgctcagtggaatatcgagaacctgcacgagcgcctcgctgatctgaagagc
gacccatgggccgactatgccaagacgcggcagcgcattacggcggccatgagaaagcgt
ttgagcggcgcgtag

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