Burkholderia pyrrocinia: ABD05_17215
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Entry
ABD05_17215 CDS
T03962
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
bpyr
Burkholderia pyrrocinia
Pathway
bpyr02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
bpyr00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
ABD05_17215
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bpyr03021
]
ABD05_17215
Transcription machinery [BR:
bpyr03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
ABD05_17215
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
KIND
GerE
Motif
Other DBs
NCBI-ProteinID:
AKM02024
UniProt:
A0A0G3WUS7
LinkDB
All DBs
Position
2:complement(194013..196064)
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AA seq
683 aa
AA seq
DB search
MTKKLNEVSVDDDANQSDEQPAAAAAPGKSKVRDRRAKEKALLKEAFATSTPGTAEELEE
RRVKLRALIKLGKERGFLTYAEINDHLPDNFTETEALEGIIGTFNDMGVAVYEQAPDAET
LLLNDNAPAASSDDEVEEEAEVALSTVDSEFGRTTDPVRMYMREMGTVELLTREGEIEIA
KRIEDGLRHMVMAISACPTTIADILAMAERVANEEIRVDELVDGLLDPNASDSADTDGFS
AKEAEAIENEDEEAEEEEEEEEEEEDDGAAQASANAAQLEALKRASLDKFSQISEWFDKM
RRAFEKEGYKSKAYLKAQETIQTELMTIRFTARTVERLCDTLRAQVDEVRQVERQILHIV
VDKCGMPRSEFIARFPGSETDLDWSEKIMAEGHSYSAVLSRNVPAIREQQQRLLDLQARV
VLPLKDLKETNRQMAAGELKARQAKREMTEANLRLVISIAKKYTNRGLQFLDLIQEGNIG
LMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKMNRISRQIL
QETGLEPDPATLAEKMEMPEDKIRKIMKIAKEPISMETPIGDDDDSHLGDFIEDNNTVAP
ADAALHASMRDVVKDVLDSLTPREAKVLRMRFGIEMSTDHTLEEVGKQFDVTRERIRQIE
AKALRKLRHPSRSDKLKSFLEGN
NT seq
2052 nt
NT seq
+upstream
nt +downstream
nt
atgaccaaaaagctgaacgaagtatccgtcgacgacgacgcaaatcagagcgacgagcag
cccgcagccgcggctgccccgggcaaatccaaggtgcgcgatcgtcgcgccaaggaaaag
gcgctgctgaaggaagcgttcgcgacgagcacgccgggcacggccgaggagctcgaagag
cgccgcgtgaagctgcgcgcgctgatcaagctcggcaaggagcgcggcttcctgacgtac
gccgaaatcaacgaccacctgccggacaacttcaccgagaccgaagccctcgaaggcatc
atcggcacgttcaacgacatgggcgtggcggtctacgagcaggcgccggacgcggaaacg
ctgctcctgaacgacaacgcgccggccgcgtcgtcggacgatgaagtcgaagaggaagcg
gaagtcgcgctgtccaccgtcgattcggaattcggccgcacgaccgatccggtccggatg
tacatgcgcgagatgggcacggtcgagctgctcacgcgcgaaggcgaaatcgagatcgcg
aagcggatcgaggacggcctgcgccacatggtgatggcgatttccgcgtgcccgacgacg
atcgccgacatcctcgcgatggccgagcgcgtcgcgaacgaagagatccgcgtcgacgag
ctcgtcgacggcctgctcgatccgaatgcttcggactccgccgatacggacggcttctcc
gcgaaggaagcggaagccatcgagaacgaggacgaggaagccgaggaggaagaggaagaa
gaggaagaggaggaggatgacggtgccgcgcaggcatcggccaacgccgcccagctcgaa
gccctcaagcgtgcctcgctcgacaagttctcgcagatcagcgagtggttcgacaagatg
cgccgcgcattcgaaaaggaaggctacaagtcgaaggcctacctgaaggcgcaggaaacg
atccagaccgaactgatgacgatccgcttcaccgcgcgtaccgtcgaacgcctgtgcgac
acgctgcgtgcgcaggtggacgaagtgcgtcaggtcgaacgtcagatcctgcacatcgtc
gtcgacaagtgcggcatgccgcgttcggaattcatcgcgcgcttcccgggcagcgaaacc
gacctcgactggtccgagaagatcatggccgaaggccattcgtacagcgcggtgctgtcg
cgtaacgttccggcgatccgcgaacagcagcagcgcctgctcgacctgcaggcgcgcgtc
gtgctgccgctgaaggacctgaaggaaaccaaccgccagatggcggccggcgaactgaag
gcgcgccaggcgaagcgcgaaatgaccgaggcgaacctgcgtctcgtgatctcgatcgcg
aagaagtacacgaaccgcggcctgcaattcctcgacctgatccaggaaggcaacatcggc
ctgatgaaggcggtggacaagttcgaataccgtcgcggctacaagttctcgacctatgcg
acgtggtggatccgtcaggccatcacgcgctcgatcgccgaccaggcgcgcacgatccgt
attccggttcacatgatcgagacgatcaacaagatgaaccgcatctcgcggcagatcctg
caggaaaccggtctcgagccggatccggcaacgctcgccgagaagatggagatgccggaa
gacaagatccgcaagatcatgaagatcgcgaaggagccgatctcgatggaaacgccgatc
ggtgacgacgacgattcccatctcggcgacttcatcgaggacaacaacacggtcgcgccg
gcggatgccgcgctgcatgcgagcatgcgcgacgtcgtgaaggacgtgctcgattcgctg
acgccgcgcgaggcgaaggtgctgcggatgcgtttcggtatcgagatgagcacggaccac
acgctcgaggaagtcggcaagcagttcgacgtcacgcgcgagcggatccgtcagatcgag
gccaaggcgctgcgcaagctgcgtcacccgagccgttccgacaagctgaagtcgttcctc
gaagggaactga
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