Burkholderia pseudomallei 1026b: BP1026B_I1232
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Entry
BP1026B_I1232 CDS
T02049
Symbol
ligA
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
bpz
Burkholderia pseudomallei 1026b
Pathway
bpz03030
DNA replication
bpz03410
Base excision repair
bpz03420
Nucleotide excision repair
bpz03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bpz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BP1026B_I1232 (ligA)
03410 Base excision repair
BP1026B_I1232 (ligA)
03420 Nucleotide excision repair
BP1026B_I1232 (ligA)
03430 Mismatch repair
BP1026B_I1232 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bpz03032
]
BP1026B_I1232 (ligA)
03400 DNA repair and recombination proteins [BR:
bpz03400
]
BP1026B_I1232 (ligA)
Enzymes [BR:
bpz01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
BP1026B_I1232 (ligA)
DNA replication proteins [BR:
bpz03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
BP1026B_I1232 (ligA)
DNA repair and recombination proteins [BR:
bpz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
BP1026B_I1232 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
BP1026B_I1232 (ligA)
MMR (mismatch excision repair)
DNA ligase
BP1026B_I1232 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
BP1026B_I1232 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
MctB
HHH
5_3_exonuc
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
AFI65874
UniProt:
A0A0H3HHK8
LinkDB
All DBs
Position
1:1322809..1324884
Genome browser
AA seq
691 aa
AA seq
DB search
MARSPVEPPASQPAKRAAWLRAELERANYAYYVLDQPDLPDAEYDRLFVELQRIEAEHPD
LVTPDSPTQRVGGEAASGFTPVVHDKPMLSLNNGFADEDVIAFDKRVADGLDKATDLAGT
VTEPVEYACELKFDGLAISLRYENGRFVQASTRGDGTTGEDVTENIRTIRAIPLTLKGKR
IPRMLDVRGEVLMFKRDFARLNERQRAAGQREFANPRNAAAGSLRQLDSKITASRPLSFF
AYGIGVLDGADMPDTHSGLLDWYETLGLPVNRERAVVRGAAGLLAFFHSVGERRESLPYD
IDGVVYKVNRRDEQDRLGFVSRAPRFALAHKFPAQEALTKLTAIDVQVGRTGAITPVARL
EPVFVGGATVTNATLHNEDEVRRKDIRIGDTVIVRRAGDVIPEVVSAVLDRRPADAQEFV
MPTECPECGSRIERLPDEAIARCTGGLFCPAQRKQALWHFAQRRALDIDGLGEKIIDQLV
EQNLVRTPADLFNLGFSTLVALDRFAEKSARNLIDSLEKAKHTTLARFIYALGIRHVGES
TAKDLAKHFGSLDPIMDAPIDALLEVNDVGPIVAESIHQFFAEEHNRTVIEQLRARGKVT
WPEGPPAPRAPQGVLAGKTVVLTGTLPTLTREAAKEMLEAAGAKVAGSVSKKTDYVVAGA
DAGSKLAKAEELGIPVLDEAGMHTLLEGHAR
NT seq
2076 nt
NT seq
+upstream
nt +downstream
nt
atggcccgatccccagttgaaccgcccgccagccagccggcgaagcgcgccgcgtggctg
cgcgccgagctcgagcgggcgaactacgcgtattacgtgctcgaccagccggacctgccc
gacgccgagtacgatcgcctcttcgtcgaactccaacggatcgaggccgagcaccccgat
ctcgtcacgcccgattcgccgacgcagcgcgtcggcggcgaggccgcgagcggcttcacg
ccggtcgtccacgacaagccgatgctctcgctcaacaacggctttgccgacgaggacgtc
atcgcgttcgacaagcgcgtcgccgacggcctcgacaaggcgaccgacctcgccggcacc
gtgaccgagcccgtcgaatacgcgtgcgagctgaagttcgacggcctcgcgatctcgctg
cgctacgagaacggccgcttcgtgcaggcgtcgacgcgcggcgacggcacgacgggcgaa
gacgtcaccgagaatatccgcacgatccgtgcgattccgctgacgctcaagggcaagcgg
ataccgcgcatgctcgacgtgcgcggcgaggtgctgatgttcaagcgcgatttcgcgcgg
ctgaacgagcgccagcgcgcggcgggccagcgcgagttcgccaatccgcgcaacgcggcg
gcgggcagcctgcggcagctcgattcgaagatcaccgcgtcgcggccgctttcgtttttc
gcatacggaatcggcgtgctcgacggcgccgacatgcccgacacgcacagcggcctgctc
gactggtacgagacgctcgggttgcccgtgaaccgggagcgcgcggtcgtgcgcggcgcg
gcgggcctgctcgcgttcttccattcggtgggcgagcggcgcgaatcgttgccgtacgac
atcgacggcgtcgtctacaaggtgaaccgccgcgacgagcaggatcggctcggcttcgtg
tcgcgcgcgccgcgcttcgcgctcgcgcacaagttccccgcgcaggaggcgctcacgaag
ctcaccgcgatcgacgtgcaggtcggccgcaccggcgcgatcacgccggtcgcgcgcctc
gagcccgtgttcgtcggcggcgcgaccgtcacgaacgcgacgctgcacaacgaggacgag
gtgcgccgcaaggacatccgcatcggcgacacggtcatcgtgcgccgcgcgggcgacgtg
attcccgaagtggtatcggccgtgctcgaccggcgtcccgccgacgcgcaggagttcgtg
atgccgaccgaatgcccggaatgcggatcgcggatcgagcgattgcccgacgaggcgatc
gcgcgctgcacgggcgggctgttttgccccgcgcagcgcaagcaggcgctctggcacttc
gcgcagcgccgtgcgctcgacatcgatgggctcggcgagaagatcatcgatcaactcgtc
gagcagaacctcgtgcgcacgccggccgatctgttcaatctcggcttctcgacgctcgtc
gcgctcgatcgcttcgcggagaaatccgcgcggaacctgatcgattcgctcgaaaaggcg
aagcacacgacgctcgcgcgcttcatttacgcgctcggcatccggcacgtcggcgaatcg
acggcgaaggacctcgcgaagcacttcggctcgctcgatccgatcatggacgcgccgatc
gacgcattgctcgaggtcaacgacgtcgggccgatcgtcgccgaatcgatccatcaattc
ttcgccgaggagcacaatcgcacggtgatcgaacagttgcgcgcgcggggcaaggtcaca
tggcccgaagggccgcccgcgccgcgcgcgccgcaaggcgtgctcgcgggcaagaccgtc
gtgctcacgggcacgctgccgacgctcacgcgggaagccgcgaaggagatgctcgaggcg
gcgggcgcgaaagtcgcgggctcggtatcgaagaagaccgattacgtcgtcgcgggcgcc
gacgcgggcagcaagctcgcgaaagccgaggaactcggcattccggtgctggacgaagca
ggcatgcacacacttctggagggccacgcgcgatga
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