Bradyrhizobium sp. ORS 285: BRAD285_5610
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Entry
BRAD285_5610 CDS
T04956
Symbol
ligA
Name
(GenBank) DNA ligase (Polydeoxyribonucleotide synthase [NAD+])
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
bro
Bradyrhizobium sp. ORS 285
Pathway
bro03030
DNA replication
bro03410
Base excision repair
bro03420
Nucleotide excision repair
bro03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bro00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BRAD285_5610 (ligA)
03410 Base excision repair
BRAD285_5610 (ligA)
03420 Nucleotide excision repair
BRAD285_5610 (ligA)
03430 Mismatch repair
BRAD285_5610 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bro03032
]
BRAD285_5610 (ligA)
03400 DNA repair and recombination proteins [BR:
bro03400
]
BRAD285_5610 (ligA)
Enzymes [BR:
bro01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
BRAD285_5610 (ligA)
DNA replication proteins [BR:
bro03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
BRAD285_5610 (ligA)
DNA repair and recombination proteins [BR:
bro03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
BRAD285_5610 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
BRAD285_5610 (ligA)
MMR (mismatch excision repair)
DNA ligase
BRAD285_5610 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
BRAD285_5610 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_2
PTCB-BRCT
Motif
Other DBs
NCBI-ProteinID:
SMX60406
UniProt:
A0A1Y6KLF3
LinkDB
All DBs
Position
complement(5615887..5618049)
Genome browser
AA seq
720 aa
AA seq
DB search
MAKTAKSTAKPKQPIDVADLTKAQAKVEWKRLALELETHDRLYYQDDAPKISDAAYDELR
RRFNAIETRFPELVSTESPSQKVGAAPSGRFKKVRHAVPMLSLDNAFAEEDVRDFVGRIA
RFLKLGDDDRVDFSAEPKIDGLSMSLRYEDGELVTAATRGDGAEGEDVTANIRTLKDVPQ
RLHGRNLPDICEIRGEVYMTKQAFLALNERQKEAGDTIFANPRNSAAGSLRQKDPTITAS
RPLGFFAYAWGEMSAMPAETQSGMIKWFEHCGFTTNPLTRLCHSVEELIAFHRSIEEQRA
ELDYDIDGVVYKVDRIDWQERLGFVSRTPRWGIAHKFPAERAMTVLKDIEIQVGRTGSFT
PVGKLEPVGVGGVIVQNVTLHNEDYIKGIGNKGEVLREGRDIRIGDTVVIQRAGDVIPQV
VDVLIDKRPADAEEFHFPKKCPCSLHTDVVREETAAGEEGSRARCTGEFACPYQKIEHLK
LFASRRAFDIDGLGEKQIQFFFDEGWVKEPSDIFTLQKRNAKLKLEEVEGYGETSVRNLF
NAIDARREIALERFIYALGMRHVGETTALALARGYGSWDAFHDACLKVAAEDEEAIAEMD
ALDQIGDTVIKSVAAYFREDHNRGIVERLTQEVKILDAEKPKRNSPIATKTVVFTGTLEK
MTRDEAKATAERLGAKVSGSVSKKTDYVVAGPGAGSKLKDAEKHGVKVLTEDEWLQLIGE
NT seq
2163 nt
NT seq
+upstream
nt +downstream
nt
atggccaagacagcaaaatcgacagcgaaacccaagcagcccatcgacgttgccgacctc
accaaggcgcaggccaaggtcgaatggaagcggctggcgctcgaactcgaaacccacgac
aggctctactaccaggatgacgcgccgaagatttcggacgcggcgtatgatgagctgcgt
cgccgcttcaacgccatcgagacgcgctttcccgagctggtcagcacggaatcaccatcg
cagaaggtgggagccgctccgtccggccgtttcaagaaggtccggcacgccgtcccgatg
ctgtcgctcgacaacgccttcgccgaggaggacgtgcgcgacttcgtcggccgcatcgcg
cgttttctgaagctcggtgatgacgaccgcgtcgatttctccgccgagccgaagatcgac
gggctctcgatgtcgctgcgttatgaggacggcgagctggtcaccgcggccacccgcggc
gacggcgccgagggcgaggatgtcaccgccaacatccgcaccctcaaggacgtgccgcag
aggctgcacggccgcaacctcccggacatttgcgagatccgcggcgaggtctacatgacc
aagcaggcgttcctcgcgctgaacgaacgccagaaggaagccggcgacaccatcttcgcc
aatccccgcaactccgccgccggctcgctacgccaaaaggatccgaccatcacggcgtca
cggccgctcggcttctttgcttacgcatggggcgagatgagcgcaatgccggcggagacg
cagagcggcatgatcaaatggttcgagcattgcggcttcaccacgaatccgctgaccagg
ctctgtcactccgtcgaggagctgatcgcgtttcatcgctccatcgaggagcagcgggcc
gagctcgactacgacatcgacggcgtcgtctacaaggtcgaccgcatcgactggcaggag
cggcttggcttcgtgtcacggacgccgcgctggggcatcgcccacaaattcccggccgag
cgcgccatgaccgtgctcaaggatatcgagatccaggtcggccgcaccggctcgttcacc
ccggtcggcaagctggagccggtcggcgtcggcggcgtcatcgtgcagaacgtgacgctg
cacaacgaggactacatcaagggcatcggcaacaagggcgaggtgctgcgcgagggccgc
gacatccggatcggcgacaccgttgtgatccagcgcgccggcgacgtgatcccgcaagtg
gtcgacgtcctcatcgacaagcgcccggccgatgccgaggaatttcacttccccaagaag
tgcccatgttcgctgcacaccgacgtggtgcgcgaggagaccgccgccggggaagaaggc
tcgcgcgcgcgctgcaccggcgagttcgcctgtccctatcagaagatcgagcacctcaag
ctgtttgcctcgcgccgcgctttcgacatcgacggactcggtgagaagcagatccagttc
ttcttcgatgaaggctgggtcaaggagccctcggacatcttcaccttgcagaagcgcaac
gccaagctgaagctggaggaggtcgagggctatggcgagacctcggtgcgcaacctgttc
aacgccatcgacgcgcgccgtgagatcgcgctggaacgcttcatctatgcgctcggcatg
cgccatgtcggggaaaccaccgcgttggcgctggcgcgcggctacggctcctgggacgcg
ttccacgacgcctgcctcaaggtcgccgctgaggatgaggaggcaatcgccgagatggat
gcgctcgaccagatcggcgacaccgtgatcaagagcgtcgccgcgtacttccgcgaggac
cacaatcgcggcatcgtcgagcggctgacccaagaggtgaagatcctcgatgccgagaag
cccaagcgcaactcgccgattgcgaccaagacggtcgtcttcaccggcacactggagaag
atgacccgcgacgaggccaaggccacggccgagcggctcggcgcgaaggtgtcgggctcc
gtgtcgaagaagaccgactacgtcgtcgccggtcccggggccggatcgaagctgaaggat
gccgagaagcacggcgtcaaggtgctgaccgaggacgagtggctgcagctgatcggggag
tag
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integrated database retrieval system
