Brassica rapa (field mustard): 103839568
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Entry
103839568 CDS
T03449
Name
(RefSeq) homeobox-leucine zipper protein HDG5 isoform X1
Organism
brp
Brassica rapa (field mustard)
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Gene cluster
GFIT
Motif
Pfam:
START
Homeodomain
Homeobox_KN
HALZ
CENP-F_N
DivIC
Motif
Other DBs
NCBI-GeneID:
103839568
NCBI-ProteinID:
XP_009114317
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Position
A09:14767952..14773866
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AA seq
825 aa
AA seq
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MLTIGEESVMTSDNRFASPPPPASSSPATIQNPNFNFIPFNSFSSIIPKEEHGMMSMSMM
MMMGDEAVEEMMENGSMGGSFGSGSEQAEDPKSGTEFDVNELRDDEQPPPAKKKRYHRHT
DRQIQEMEALFKENPHPEDKQRQRLSHELGLKPRQVKFWFQNRRTQMKAQQDRAENVMLR
ADNDNLKLENSQLQAELRCLSCPSCGGPTVLGDIPFNELHIENCRLREELDRLCCIASRY
TDRPMQPMPPSQPLINPASELPHHQPSLELDISAYAGNYPDHPCSDLMSLPPQDSACFFP
TQTINNSSNNNMLLADEEKVMAMEFAVSCVQELTKMCDTEEPLWVNKKSDKIGGETLCLN
EEEYMRLFPWPMEKNNNNGDFRREASKANAVVIMNSITLVNAFLNADKWSEMFCSIVARV
KTVQIISSGVSGASGSLMLMYAELQVLSPLVPTREAYFLRYVEQNSENGNWAIVDFPIDS
FHDQNSPHEYKRKPSGCIIQDMPNGYSKVKWVEHVEVVERHVHETFAEYVKSGMAFGASR
WVDVLERQCERMASLMARNITDLGVIRSAEARRNMMRLSQRMMKTFCVNISTSYGQSWTA
LSETAKDTVRITTRKVCEPGQPTGVVLVAVSTTWLPFSHFKVFDLLRDQHHHSLLEVLFS
GNSSHEVAHIANGSHPGNCISLLRVNVASNSWHNVELMLQESCIDNSGGLIVYSTVGVDS
IQHVMNGEDPSNVPVLPLGFSVVPVNPPGEVEGISVNSIPPPSCLLTVGIQVLASNVPTA
KPNLSTVTTINNHLCSIVNQITSVLSSTISPTIASSAAAAKQDVI
NT seq
2478 nt
NT seq
+upstream
nt +downstream
nt
atgttgacaataggggaagaaagtgtgatgacatcagacaacagatttgcttcgccgcct
ccgcctgcttcttcttctccggcaacaatccaaaaccctaattttaatttcatccctttc
aactcattttcctccattatcccgaaggaggagcatggaatgatgagtatgagcatgatg
atgatgatgggagatgaagcagtggaggaaatgatggaaaacgggtcgatgggtgggtca
ttcgggtcgggtagtgaacaagcagaagatccaaagtccgggactgagtttgatgttaat
gaacttcgagacgatgaacaacctcctcctgcgaagaagaaacgttaccacagacatact
gatcgtcagatccaagaaatggaggcattgttcaaagaaaaccctcatccagaggacaag
caaagacaaagattaagtcatgaacttggtctcaagcctcgacaagtcaagttttggttt
caaaataggcgtacccaaatgaaggcacaacaagaccgagcagagaatgtgatgttaagg
gcagataacgataacctcaagttggagaattctcaacttcaggcggagcttcggtgcctc
tcgtgtccttcttgcggcggccccaccgtcctcggcgacattcctttcaacgagctccac
attgagaactgtcgcctccgtgaagagcttgatcgtctatgctgcatagcttcaagatac
acagatcgtccaatgcaacccatgccaccatctcagccgttgatcaatcctgcttcggag
cttccacatcaccaaccttcattggagttagatattagcgcatacgctggtaactatcca
gatcatccttgttcagacttgatgtcgcttcctccacaagacagtgcttgtttcttccca
actcaaactattaacaacagcagcaacaacaacatgttacttgcggatgaagaaaaggtt
atggctatggaatttgctgtctcttgcgtccaagaacttactaaaatgtgtgacacggaa
gagcctttgtgggtcaacaagaaatcggacaagatcggtggcgagactttgtgtctgaac
gaggaagagtacatgaggttgttcccatggccaatggagaagaataacaacaatggagat
tttcgtagagaagcttcaaaggcaaacgcagttgttatcatgaacagcataacgcttgtt
aacgcgtttctaaacgctgataagtggtcggagatgttctgctcaatagtggctagggta
aaaacggttcagatcatttcatctggagtttctggagctagtggctctcttatgctgatg
tatgcagagttacaggtactatctccactggttccaactcgtgaagcttattttctacgt
tacgtggaacaaaactctgaaaacgggaactgggcaatcgtagacttcccgatcgatagc
ttccacgaccaaaacagtccacatgagtataagagaaaaccttcagggtgcatcattcaa
gacatgcctaatggatactcaaaggtcaagtgggtcgagcacgtggaggtagtcgagagg
cacgtgcacgagaccttcgcagagtatgtgaaaagcggtatggcttttggagctagccgc
tgggtcgatgtgttggagagacaatgcgagaggatggctagtctaatggctagaaacata
accgatcttggagtgattcgatcagcagaagcgaggaggaacatgatgaggttatcacaa
aggatgatgaaaacattctgtgtgaatataagtacatcgtacggacaatcatggaccgca
ctgtctgaaacagcgaaagacactgtgagaatcacgacaaggaaagtgtgtgagcctggt
cagccaactggagttgttcttgttgctgtctcaacaacttggcttccattttctcacttc
aaagtctttgatctcctccgtgatcaacatcaccactctctcttggaagttttgttcagt
ggaaactcatctcatgaagttgctcatatagccaatggttcacatcctggaaactgcata
tctcttcttcgtgtcaatgtagcgagcaactcatggcataacgtggagctgatgcttcaa
gagagctgtattgataactctggcggcttaatcgtctactctacggtcggtgttgactca
atccagcacgtgatgaacggtgaagatccttcaaatgttccggttttgcccctcggattc
tccgtcgttcccgtgaaccctcccggtgaggtcgagggtatttctgtcaattcgattcct
ccgccgtcgtgtcttctcaccgttgggattcaggtcttggcgagcaacgtcccaaccgcg
aaaccgaatctctccaccgtcacaaccatcaacaaccacctttgctccatcgtcaatcag
atcacttcggtccttagcagcaccatttctccgaccatcgcatcttccgccgccgcagcc
aaacaagatgtcatctaa
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