KEGG   Brassica rapa (field mustard): 103843415Help
Entry
103843415         CDS       T03449                                 

Definition
(RefSeq) DNA ligase 1-like
  KO
K10747  
DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
brp  Brassica rapa (field mustard)
Pathway
DNA replication
Base excision repair
Nucleotide excision repair
Mismatch repair
Brite
KEGG Orthology (KO) [BR:brp00001]
 Genetic Information Processing
  Replication and repair
   03030 DNA replication
    103843415
   03410 Base excision repair
    103843415
   03420 Nucleotide excision repair
    103843415
   03430 Mismatch repair
    103843415
Enzymes [BR:brp01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     103843415
    6.5.1.6  DNA ligase (ATP or NAD+)
     103843415
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     103843415
DNA replication proteins [BR:brp03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    103843415
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     103843415
DNA repair and recombination proteins [BR:brp03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     103843415
   NER (nucleotide excision repair)
    Other NER factors
     103843415
   MMR (mismatch exicision repair)
    Other MMR factors
     103843415
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif Motif
Other DBs
NCBI-GeneID: 
NCBI-ProteinID: 
LinkDB All DBs
Position
A9
AA seq 803 aa AA seqDB search
MLAIRSSNHFRCISSLCTKTRFSSVLVSLNRQVSPFPSSSRLHHRAMSSSRPSAFDALMS
NARASAKKKTTPQASNSSPSPNKRKISKTQDADSPKAEAFSDSPKPRSDSPSIAEDLKKG
AKTQDADLTKVEAFSDSAKPRSSIAKKSRTLSQTDKVDELKSRIVLLKRKPGEFDPERVA
CWEKGERVPFLFVALAFDLVSAESGRIVITDILCNMLRTVIATTPDDLVAAVYLAANEIA
PAHEGVELGIGEGSIIKAISEAFGRTEAQVKKLNTELGDLGLVAKGSRSSQTMMFKPEPL
TVVKVFNTFRQIAKESGKDSTEKKKDRMKALLVAATDCEPLYLTRLLQAKLRLGFSNQTV
LAALGQAAVYNEEHSKPPPKTKSPLEEAAKIVKQVFTVLPVYDIIVPALLTGGVWNLPKT
CNFTLGVPIGPMLAKPTKGVGEIINKFQDTVFTCEYKYDGERAQIHCMEDGTFEIYSRNA
ERNTGKYPDVALALSRLKKPSVKSFILDCEVVAFDREKKKILPFQILSTRARKNVNVNDI
KVGVCIFAFDMLYLNGQQLIQENLDIRREKLYGSFEEDPGYFQFATALTSSDIDEIQKFL
DASVDIGCEGLIIKTMNSDATYEPAKRSNNWLKLKKDYMDSIGDSVDLVPIAAFHGRGKR
TGVFGAFLLACYDADKEEFQSICKIGTGFSEAVLEERSTSLRSRVIPTPKQYYRVGDSLN
PDVWFEPTEVWEVKAADLTISPVHRAANGIVDPDKGISLRFPRLLRVREDKKPEEATSSE
QIADMYQAQKHNHPSNEGKGEDD
NT seq 2412 nt NT seq  +upstreamnt  +downstreamnt
atgttagcgattcgatcatcgaatcacttccgatgcatttcttctctctgcactaaaact
cgattctcctccgtattagtctctctcaatcgccaagtttccccctttccctcctcctcg
cgcctccaccacagagcaatgtcttcttctcgcccctctgcattcgacgctctcatgtcc
aacgctcgcgcttccgccaagaagaaaacgactccccaagcttccaattcatctccctcc
ccgaacaaaagaaaaatctcgaaaacccaagacgccgattcgccaaaggcggaagctttt
tccgattcccccaaacccagatcagattcgccgtcaattgcggaagatttgaagaaggga
gcgaaaacccaagacgccgatttgacaaaggtggaggctttttccgattcggctaaaccc
agatcgtcaattgcgaaaaagtctaggactttgagtcagacggataaagtcgacgaattg
aagagtaggattgtgttgctgaagaggaagcctggcgaattcgatccggagagagtggcg
tgttgggagaaaggggagagagttccgtttttgtttgtggcattggcgtttgatttggta
tcagctgagagtgggaggattgtgattactgatattttgtgtaacatgttgaggactgtt
attgccaccactcctgatgatttggtcgctgctgtttatcttgcggcgaatgagattgct
cctgctcatgaaggggtggagttggggattggtgaaggttctattattaaggccatctct
gaagcttttggtagaactgaggcgcaggttaagaagctgaatacggaactgggagacttg
gggcttgtagcaaaaggaagccgttcgtctcagactatgatgttcaagccagaaccattg
actgttgtcaaggttttcaatacttttcgacaaattgctaaggaaagtgggaaagatagt
acagaaaagaagaaggatcggatgaaggcacttcttgtggcagctacagactgtgaacct
ctctacttaactcgtttacttcaggcaaaattgcggttagggttctcaaatcagactgtc
ttagctgccttgggacaagcagctgtttataatgaagaacactcaaagccacccccaaaa
accaagtctcctttagaggaggctgcgaagattgttaagcaagtattcactgtgcttcct
gtgtatgacattatagttcctgctcttctaactggtggtgtgtggaatcttcctaaaact
tgtaacttcacacttggtgttcctattggaccaatgcttgcaaaaccaacaaaaggtgta
ggcgagataattaataaattccaggacacagttttcacatgcgaatacaaatatgatgga
gaacgtgcacagatacattgtatggaggatggtacattcgagatatatagtcgaaatgct
gaaaggaacactggaaagtaccctgatgttgctcttgcgttatcaaggttaaagaagccc
tctgtgaaatcttttatcctggattgtgaggttgttgctttcgatagagagaaaaagaag
attcttccgtttcagattctgagcactcgagcgcgtaagaatgtgaacgtcaatgatatc
aaagttggcgtatgcatctttgcttttgacatgttatatctaaatggacagcaacttatc
caggaaaatcttgatattcgccgagagaagctgtacggatcatttgaggaagatcctgga
tatttccagtttgcaactgctctaacatccagcgatatcgatgaaatacaaaagtttctt
gacgcttctgttgacattgggtgtgaagggttaatcattaaaacaatgaattcagatgcg
acatatgagcctgcaaagcgatcgaataattggttaaaactgaagaaagactatatggac
agcattggggattctgtggatcttgtaccaattgctgctttccatggacgtggcaaacgc
acaggtgtctttggtgcattcttactagcttgctatgatgctgataaggaagagttccag
agcatttgtaaaataggtactggattttctgaagctgtgcttgaagaacggtctacgagt
cttcggtccagagtgattcctactcctaaacaatactaccgagttggagacagtctcaat
ccagatgtttggtttgagcccactgaggtctgggaagtgaaggcagctgacttgacaatt
agccctgtgcatcgtgcagccaatggaattgtggatcctgataagggaatttctctacgt
tttcctcgtttactccgtgtacgggaagacaagaagccagaggaagcaacatcatctgaa
cagattgctgatatgtaccaagctcaaaaacacaaccatccaagcaatgaaggcaaaggt
gaagatgattga

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