Blastococcus saxobsidens: BLASA_4306
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Entry
BLASA_4306 CDS
T01752
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
bsd
Blastococcus saxobsidens
Pathway
bsd03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
bsd00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
BLASA_4306 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bsd03021
]
BLASA_4306 (rpoC)
03400 DNA repair and recombination proteins [BR:
bsd03400
]
BLASA_4306 (rpoC)
Enzymes [BR:
bsd01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
BLASA_4306 (rpoC)
Transcription machinery [BR:
bsd03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
BLASA_4306 (rpoC)
DNA repair and recombination proteins [BR:
bsd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
BLASA_4306 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
CCG05129
UniProt:
H6RMU1
LinkDB
All DBs
Position
complement(4159419..4163324)
Genome browser
AA seq
1301 aa
AA seq
DB search
MLDVNFFDELRIGLATGDDIRQWSHGEVKKPETINYRTLRPEKDGLFCEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWFFKGVPSRLGYLLDL
APKDLEKIIYFAAYMITSVDGEARHRDLSTIEAEISAEKSNLEGRRDADVEARQQKLEAD
LAELEAEGAKSDVRRKVREGGEREMRQLRDRAQREIDRLDEVMDTFRKLEVKQLIADEGL
YRELRDRFGEYFEGGMGAAALQKLLASFDLDAEAVSLRETIRSGKGQRKLRALKRLKVVA
AFQQTRNSPMGMVLDCVPVIPPDLRPMVQLDGGRFATSDMNDLYRRVINRNNRLKRLLDL
GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPQLKLHQCGLPKQMALELFKPFVMKRLVDLNHAQNIKSAKRMVERAR
PVVWDVLEEVITEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQIHPLVCTAFNADFDGDQ
MAVHLPLSAEAQAEARILMLSSNNILSPADGRPITAPTQDMVLGLYHLTTLVASPLEADG
GHPRAFSSAAEAVMAYDKGDLALQERAWIRLDEVYGVDNGTVNEPWEQPEDWTPGAPALV
QTSLGRVLFNEALPEDYRFVNYQVPKKELGAIVNDLAERYPKVQVAATLDALKAAGFHWA
TRAGITIAIDDVVTPPSKQAILDRHEDEAAKIERQYERGVITDAERRGELIEIWTRARAE
VSQAMVDNFPTTNPVWVMVNSGARGNMMQISQIAGMRGLVANPKGEIIPRPIKANFREGL
SVLEYFISTHGARKGLADTALRTADSGYLTRRLVDVSQDVIIREEDCGTDRGVLMPIGTV
VDGTVTRDAHVETSVYARALAADVVAEDGTVIAQANSDLGDVLIQTLIDAQVSEVKVRCV
LTCESLLGTCATCYGRSLATGKLVDVGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGEDI
THGLPRVVELFEARVPKGKAPIAELAGTVRIEDGEQFRKLTITPDDGSEEVVYDKLSRRS
RLRVEDGAHVEVGEQLTEGAVDPHEVLRIMGPREVQLHLVREVQEVYRSQGVSIHDKHIE
VIIRQMLKRVTIIDSGATEFLPGALVERTIFETENRRVVAEGGEPASARPVLMGITKASL
ATESWLSAASFQETTKVLTDAAIQGKSDSLLGLKENVIIGKLIPAGTGISRYRNIAVEPT
EEARAAVYTMAGYEDGQYYSPDVFGQGTGEAVRLEEYDWRG
NT seq
3906 nt
NT seq
+upstream
nt +downstream
nt
ttgctcgacgtcaacttcttcgatgagttgcgcatcggcctggccaccggcgacgacatc
cgccagtggtcgcacggtgaggtgaagaagcccgagaccatcaactaccggacgctgcgg
ccggagaaggatggtctgttctgcgagaagatcttcggtcccacccgggactgggagtgc
tactgcggcaagtacaagcgggtccggttcaagggcatcatctgcgagcgctgcggcgtc
gaggtgacccgggccaaggtccgtcgtgagcggatgggccacatcgagctggccgctccg
gtcacccacatctggttcttcaagggcgttccctcgcgcctgggctacctgctcgacctg
gcgcccaaggacctcgagaagatcatctacttcgcggcctacatgatcacctcggtcgac
ggcgaggcgcggcaccgcgacctctcgaccatcgaggccgagatcagcgccgagaagtcc
aacctcgagggccggcgtgacgccgacgtcgaggcccgccagcagaagctggaggccgac
ctcgccgagctcgaggccgagggtgccaagtccgacgtgcgccgcaaggtgcgcgagggc
ggcgagcgcgagatgcgccagctgcgggaccgcgcccagcgggagatcgaccgcctcgac
gaggtgatggacaccttccgcaagctcgaggtcaagcagctcatcgccgacgagggcctc
taccgcgagctgcgcgaccgcttcggtgagtacttcgagggtggcatgggcgccgcggcg
ctgcagaagctgctcgcgagcttcgacctcgacgccgaggccgtctcgctgcgggagacc
atccgcagcggcaagggccagcgcaagctgcgggccctcaagcggctgaaggtcgtcgcg
gccttccagcagacccgcaactcgcccatgggcatggtgctggactgcgtgccggtcatc
ccgccggacctgcgcccgatggtgcagctcgacggtggccgcttcgccaccagcgacatg
aatgacctgtaccgccgggtcatcaaccggaacaaccggctgaagcggctgctcgacctc
ggcgcccccgagatcatcgtcaacaacgagaagcggatgctccaggagtccgtggacgcg
ctgttcgacaacggccgtcgcggccggccggtcaccggcccgggcaaccgcccgctgaag
tcgctgagcgacctgctcaagggcaagcagggccggttccgccagaacctcctcggcaag
cgcgtcgactactccggccgttcggtcatcgtcgtcggcccgcagctgaagctgcaccag
tgcggcctgcccaagcagatggcgctggagctgttcaagcccttcgtcatgaagcggctg
gtcgacctcaaccacgcgcagaacatcaagtccgccaagcggatggtcgagcgtgcgcgc
ccggtcgtgtgggacgtgctggaagaggtcatcaccgagcacccggtgctgctcaaccgg
gcgccgacgctgcaccgtctgggcatccaggccttcgagccgcagctggtcgagggcaag
gccatccagatccacccgctggtctgcaccgcgttcaacgcggacttcgacggtgaccag
atggcggtgcacctgccgctgtcggccgaggcgcaggccgaggcccggatcctgatgctg
tcgagcaacaacatcctgagcccggccgatggtcgcccgatcaccgcgccgacccaggac
atggtgttgggcctgtaccacctcacgacgctggtggcctcgccgctggaggccgacggc
ggtcacccgcgcgccttctcgtcggccgccgaggcggtcatggcgtacgacaagggcgac
ctggccctgcaggagcgggcctggattcgtctggacgaggtctacggcgtcgacaacggc
acggtgaacgagccgtgggagcagccggaggactggacgccgggtgctcccgcgctcgtg
cagaccagcctgggccgggtgctgttcaacgaggccctgcccgaggactaccgcttcgtc
aactaccaggtgccgaagaaggagctcggggcgatcgtcaacgacctcgccgagcgctac
cccaaggtgcaggtcgcggcgacgctggacgcgctgaaggccgccgggttccactgggcc
acccgggccggcatcacgatcgccatcgacgacgtcgtcacgccgccgtcgaagcaggcg
atcctcgaccggcacgaggacgaggccgccaagatcgagcgccagtacgagcgcggtgtc
atcaccgacgccgagcgtcgtggggagctcatcgagatctggacccgcgcgcgggccgag
gtcagccaggcgatggtggacaacttcccgaccaccaacccggtctgggtcatggtcaac
tcgggcgcccgaggcaacatgatgcagatcagccagatcgccggtatgcgcggtctggtc
gccaaccccaagggcgagatcatcccgcggccgatcaaggcgaacttccgcgagggtctg
tccgtgctggagtacttcatctccacgcacggtgcccgcaagggcctggccgacacggcg
ctccgtaccgccgactccggctacctcacccgccggctggtcgacgtctcgcaggacgtc
atcatccgcgaggaggactgcggcaccgaccgcggcgtcctcatgccgatcggcaccgtc
gtggacggcacggtcacccgtgacgcccacgtggagaccagcgtctacgcccgcgccctc
gccgccgacgtggtggccgaggacgggacggtcatcgcccaggcgaacagcgacctgggt
gacgtcctcatccagacgctgatcgacgcccaggtgtccgaggtcaaggtccgctgcgtc
ctgacctgcgagtcgctgctgggcacctgcgccacctgctacggccggtcgctggcgacc
ggcaagctcgtggacgtcggcgaggcggtcgggatcatcgccgcccagtcgatcggtgag
cccggcacccagctgacgatgcgcacgttccacaccggtggtgtcgcgggtgaggacatc
acccacggtctgccgcgcgtggtcgagctcttcgaggcccgcgtgcccaagggcaaggcg
ccgatcgccgagctggccggcaccgtccggatcgaggacggcgagcagttccggaagctc
accatcaccccggacgacggctccgaggaggtcgtctacgacaagctgtcgcgccgctcg
cggctgcgcgtcgaggacggtgcgcacgtcgaggtcggcgagcagctcaccgagggtgcc
gtcgacccgcacgaggtgctgcggatcatgggcccgcgcgaggtgcagctgcacctggtg
cgcgaggtccaggaggtctaccgcagccagggcgtgtcgatccacgacaagcacatcgag
gtgatcatccgccagatgctcaagcgggtgaccatcatcgactcgggcgccacggagttc
ctgccgggtgcgctggtcgagcggacgatcttcgagaccgagaaccgtcgggtcgtcgcc
gagggcggcgagccggcctcggcccgtccggtgctcatgggcatcaccaaggcctcgctc
gcgaccgagtcgtggctgtcggccgcctccttccaggagacgaccaaggtgctcaccgac
gccgcgatccagggcaagagcgacagcctgctcgggctcaaggagaacgtgatcatcgga
aagctgatcccggccggtaccggcatcagccgctaccggaacatcgcggtcgagccgacc
gaggaggcgcgtgccgccgtctacaccatggccggctacgaggacgggcagtactacagc
ccggacgtcttcggtcagggcaccggcgaggccgtgcgcctcgaggagtacgactggcgg
ggctga
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integrated database retrieval system