KEGG   Blastococcus saxobsidens: BLASA_4306
Entry
BLASA_4306        CDS       T01752                                 
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
bsd  Blastococcus saxobsidens
Pathway
bsd03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:bsd00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    BLASA_4306 (rpoC)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:bsd03021]
    BLASA_4306 (rpoC)
   03400 DNA repair and recombination proteins [BR:bsd03400]
    BLASA_4306 (rpoC)
Enzymes [BR:bsd01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     BLASA_4306 (rpoC)
Transcription machinery [BR:bsd03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     BLASA_4306 (rpoC)
DNA repair and recombination proteins [BR:bsd03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      BLASA_4306 (rpoC)
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4
Other DBs
NCBI-ProteinID: CCG05129
UniProt: H6RMU1
LinkDB
Position
complement(4159419..4163324)
AA seq 1301 aa
MLDVNFFDELRIGLATGDDIRQWSHGEVKKPETINYRTLRPEKDGLFCEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWFFKGVPSRLGYLLDL
APKDLEKIIYFAAYMITSVDGEARHRDLSTIEAEISAEKSNLEGRRDADVEARQQKLEAD
LAELEAEGAKSDVRRKVREGGEREMRQLRDRAQREIDRLDEVMDTFRKLEVKQLIADEGL
YRELRDRFGEYFEGGMGAAALQKLLASFDLDAEAVSLRETIRSGKGQRKLRALKRLKVVA
AFQQTRNSPMGMVLDCVPVIPPDLRPMVQLDGGRFATSDMNDLYRRVINRNNRLKRLLDL
GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPQLKLHQCGLPKQMALELFKPFVMKRLVDLNHAQNIKSAKRMVERAR
PVVWDVLEEVITEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQIHPLVCTAFNADFDGDQ
MAVHLPLSAEAQAEARILMLSSNNILSPADGRPITAPTQDMVLGLYHLTTLVASPLEADG
GHPRAFSSAAEAVMAYDKGDLALQERAWIRLDEVYGVDNGTVNEPWEQPEDWTPGAPALV
QTSLGRVLFNEALPEDYRFVNYQVPKKELGAIVNDLAERYPKVQVAATLDALKAAGFHWA
TRAGITIAIDDVVTPPSKQAILDRHEDEAAKIERQYERGVITDAERRGELIEIWTRARAE
VSQAMVDNFPTTNPVWVMVNSGARGNMMQISQIAGMRGLVANPKGEIIPRPIKANFREGL
SVLEYFISTHGARKGLADTALRTADSGYLTRRLVDVSQDVIIREEDCGTDRGVLMPIGTV
VDGTVTRDAHVETSVYARALAADVVAEDGTVIAQANSDLGDVLIQTLIDAQVSEVKVRCV
LTCESLLGTCATCYGRSLATGKLVDVGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGEDI
THGLPRVVELFEARVPKGKAPIAELAGTVRIEDGEQFRKLTITPDDGSEEVVYDKLSRRS
RLRVEDGAHVEVGEQLTEGAVDPHEVLRIMGPREVQLHLVREVQEVYRSQGVSIHDKHIE
VIIRQMLKRVTIIDSGATEFLPGALVERTIFETENRRVVAEGGEPASARPVLMGITKASL
ATESWLSAASFQETTKVLTDAAIQGKSDSLLGLKENVIIGKLIPAGTGISRYRNIAVEPT
EEARAAVYTMAGYEDGQYYSPDVFGQGTGEAVRLEEYDWRG
NT seq 3906 nt   +upstreamnt  +downstreamnt
ttgctcgacgtcaacttcttcgatgagttgcgcatcggcctggccaccggcgacgacatc
cgccagtggtcgcacggtgaggtgaagaagcccgagaccatcaactaccggacgctgcgg
ccggagaaggatggtctgttctgcgagaagatcttcggtcccacccgggactgggagtgc
tactgcggcaagtacaagcgggtccggttcaagggcatcatctgcgagcgctgcggcgtc
gaggtgacccgggccaaggtccgtcgtgagcggatgggccacatcgagctggccgctccg
gtcacccacatctggttcttcaagggcgttccctcgcgcctgggctacctgctcgacctg
gcgcccaaggacctcgagaagatcatctacttcgcggcctacatgatcacctcggtcgac
ggcgaggcgcggcaccgcgacctctcgaccatcgaggccgagatcagcgccgagaagtcc
aacctcgagggccggcgtgacgccgacgtcgaggcccgccagcagaagctggaggccgac
ctcgccgagctcgaggccgagggtgccaagtccgacgtgcgccgcaaggtgcgcgagggc
ggcgagcgcgagatgcgccagctgcgggaccgcgcccagcgggagatcgaccgcctcgac
gaggtgatggacaccttccgcaagctcgaggtcaagcagctcatcgccgacgagggcctc
taccgcgagctgcgcgaccgcttcggtgagtacttcgagggtggcatgggcgccgcggcg
ctgcagaagctgctcgcgagcttcgacctcgacgccgaggccgtctcgctgcgggagacc
atccgcagcggcaagggccagcgcaagctgcgggccctcaagcggctgaaggtcgtcgcg
gccttccagcagacccgcaactcgcccatgggcatggtgctggactgcgtgccggtcatc
ccgccggacctgcgcccgatggtgcagctcgacggtggccgcttcgccaccagcgacatg
aatgacctgtaccgccgggtcatcaaccggaacaaccggctgaagcggctgctcgacctc
ggcgcccccgagatcatcgtcaacaacgagaagcggatgctccaggagtccgtggacgcg
ctgttcgacaacggccgtcgcggccggccggtcaccggcccgggcaaccgcccgctgaag
tcgctgagcgacctgctcaagggcaagcagggccggttccgccagaacctcctcggcaag
cgcgtcgactactccggccgttcggtcatcgtcgtcggcccgcagctgaagctgcaccag
tgcggcctgcccaagcagatggcgctggagctgttcaagcccttcgtcatgaagcggctg
gtcgacctcaaccacgcgcagaacatcaagtccgccaagcggatggtcgagcgtgcgcgc
ccggtcgtgtgggacgtgctggaagaggtcatcaccgagcacccggtgctgctcaaccgg
gcgccgacgctgcaccgtctgggcatccaggccttcgagccgcagctggtcgagggcaag
gccatccagatccacccgctggtctgcaccgcgttcaacgcggacttcgacggtgaccag
atggcggtgcacctgccgctgtcggccgaggcgcaggccgaggcccggatcctgatgctg
tcgagcaacaacatcctgagcccggccgatggtcgcccgatcaccgcgccgacccaggac
atggtgttgggcctgtaccacctcacgacgctggtggcctcgccgctggaggccgacggc
ggtcacccgcgcgccttctcgtcggccgccgaggcggtcatggcgtacgacaagggcgac
ctggccctgcaggagcgggcctggattcgtctggacgaggtctacggcgtcgacaacggc
acggtgaacgagccgtgggagcagccggaggactggacgccgggtgctcccgcgctcgtg
cagaccagcctgggccgggtgctgttcaacgaggccctgcccgaggactaccgcttcgtc
aactaccaggtgccgaagaaggagctcggggcgatcgtcaacgacctcgccgagcgctac
cccaaggtgcaggtcgcggcgacgctggacgcgctgaaggccgccgggttccactgggcc
acccgggccggcatcacgatcgccatcgacgacgtcgtcacgccgccgtcgaagcaggcg
atcctcgaccggcacgaggacgaggccgccaagatcgagcgccagtacgagcgcggtgtc
atcaccgacgccgagcgtcgtggggagctcatcgagatctggacccgcgcgcgggccgag
gtcagccaggcgatggtggacaacttcccgaccaccaacccggtctgggtcatggtcaac
tcgggcgcccgaggcaacatgatgcagatcagccagatcgccggtatgcgcggtctggtc
gccaaccccaagggcgagatcatcccgcggccgatcaaggcgaacttccgcgagggtctg
tccgtgctggagtacttcatctccacgcacggtgcccgcaagggcctggccgacacggcg
ctccgtaccgccgactccggctacctcacccgccggctggtcgacgtctcgcaggacgtc
atcatccgcgaggaggactgcggcaccgaccgcggcgtcctcatgccgatcggcaccgtc
gtggacggcacggtcacccgtgacgcccacgtggagaccagcgtctacgcccgcgccctc
gccgccgacgtggtggccgaggacgggacggtcatcgcccaggcgaacagcgacctgggt
gacgtcctcatccagacgctgatcgacgcccaggtgtccgaggtcaaggtccgctgcgtc
ctgacctgcgagtcgctgctgggcacctgcgccacctgctacggccggtcgctggcgacc
ggcaagctcgtggacgtcggcgaggcggtcgggatcatcgccgcccagtcgatcggtgag
cccggcacccagctgacgatgcgcacgttccacaccggtggtgtcgcgggtgaggacatc
acccacggtctgccgcgcgtggtcgagctcttcgaggcccgcgtgcccaagggcaaggcg
ccgatcgccgagctggccggcaccgtccggatcgaggacggcgagcagttccggaagctc
accatcaccccggacgacggctccgaggaggtcgtctacgacaagctgtcgcgccgctcg
cggctgcgcgtcgaggacggtgcgcacgtcgaggtcggcgagcagctcaccgagggtgcc
gtcgacccgcacgaggtgctgcggatcatgggcccgcgcgaggtgcagctgcacctggtg
cgcgaggtccaggaggtctaccgcagccagggcgtgtcgatccacgacaagcacatcgag
gtgatcatccgccagatgctcaagcgggtgaccatcatcgactcgggcgccacggagttc
ctgccgggtgcgctggtcgagcggacgatcttcgagaccgagaaccgtcgggtcgtcgcc
gagggcggcgagccggcctcggcccgtccggtgctcatgggcatcaccaaggcctcgctc
gcgaccgagtcgtggctgtcggccgcctccttccaggagacgaccaaggtgctcaccgac
gccgcgatccagggcaagagcgacagcctgctcgggctcaaggagaacgtgatcatcgga
aagctgatcccggccggtaccggcatcagccgctaccggaacatcgcggtcgagccgacc
gaggaggcgcgtgccgccgtctacaccatggccggctacgaggacgggcagtactacagc
ccggacgtcttcggtcagggcaccggcgaggccgtgcgcctcgaggagtacgactggcgg
ggctga

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