Bibersteinia trehalosi USDA-ARS-USMARC-192: WQG_3940
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Entry
WQG_3940 CDS
T02504
Name
(GenBank) Ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
bto
Bibersteinia trehalosi USDA-ARS-USMARC-192
Pathway
bto03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bto00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
WQG_3940
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bto03019
]
WQG_3940
03009 Ribosome biogenesis [BR:
bto03009
]
WQG_3940
Enzymes [BR:
bto01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
WQG_3940
Messenger RNA biogenesis [BR:
bto03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
WQG_3940
Ribosome biogenesis [BR:
bto03009
]
Prokaryotic type
rRNA processing factors
WQG_3940
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
PNPase_C
S1
Motif
Other DBs
NCBI-ProteinID:
AGH37674
LinkDB
All DBs
Position
404764..407694
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AA seq
976 aa
AA seq
DB search
MLINATQKEELRVALVDGQRLFDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDYGAE
RHGFLPLKEISREYFPQGYVFQGRPNIKDIIQEGQEVIVQVSKEERGNKGAALTTFISLA
GSYLVLMPNNPRAGGISRRIEGDERLELKEALDCLDVPEDVGLIVRTAGVGKSPEELQWD
LKVLLHHWEAIKKAAESRPAPFLIHQESDVIVRAIRDYLRRDIGEILIDSKKVFEKAKNH
IRLVRPDFINRVRLYEGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDI
NSARATRGGDIEETALNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRIR
EATRQDRARIQFGRISRFGLLEMSRQRLSPSLSEASSHVCPRCQGTGKVRDNESIALSIL
RLVEEEAIKENSAQIHSIVPVQIATYLLNEKRKAISDIEKRHDVQVIVVPSESMETPHFS
VYRLRENEIVPALSYDLAKRYQDRQEEQMPHSHSDEALVTRNEPVITVESVLQNAELNIQ
PAPTPVKPAKPSLLSRFFAAIKGFFTEEEEKAPEKKPRNKTRNQRDRRNQRRERPNRERN
PERNERNAVQAVKNEEKSANISEPKKRREIVEEIAGSSPQAEQQAKVAERRQRRELRKKV
RIEAAPAVDAGVVEPRVEKNELETTSVAPVANVTLAEVVIPEAKADTLEMKGENDNRENG
RRRMPRHLRVGNQRRRERRETSQVVAPMPLTAAVMSPELASGKVSVALANTKVEEKPSFL
SVDEMLQQEQVVVTTAETENATHQESVQPFVDFVTQGTNRDLVKENKERKEQTREQTDEH
VTKSVKPEMPTAQPFGLVVSQPSTRDLVKENHERRGIPAGSANSVATQTVADTELAPMDM
PTSTYQSEYQFSGKLGTVSRVEHTTAEKTLAAAPSEEIHLVQLHEWQHSKYYFFGKGFGG
HTSAMSHVYSVARQPE
NT seq
2931 nt
NT seq
+upstream
nt +downstream
nt
atgttaattaatgccacgcaaaaagaagagttgcgtgtagccctcgttgatgggcaaaga
ttgttcgacttggatatcgaaagcccaggacacgaacagaaaaaagctaatatctacaaa
ggaaaaattacccgtgtcgagccaagtttagaggctgcattcgttgattatggtgctgaa
cgtcacggtttcctcccattaaaagaaatttcccgtgaatacttcccacaaggttatgta
ttccaaggccgcccaaatatcaaagatattattcaagaagggcaggaagttattgttcaa
gtgagcaaagaagagcgaggcaataaaggtgcagcattaaccacctttatctcccttgcg
ggcagttatcttgtcttaatgccaaacaatcctcgtgcaggcggcatttctcgtcgtatt
gaaggcgatgagcgtttagagttaaaagaagcattagattgcttagatgtgccagaagac
gtaggacttattgtgcgtaccgcgggtgttggtaaatcacctgaagagttgcaatgggac
ttaaaagtgctgttgcaccattgggaggctatcaagaaagcggctgaatctcgccctgcg
ccattcttaatccaccaagaaagcgatgtgattgtacgtgcaatccgtgattatcttcgt
cgtgacattggtgagatcttaattgatagcaaaaaagtatttgagaaagccaaaaatcat
atccgcttagttcgccctgattttattaaccgtgttcgtttatacgaaggcgaagtgccg
ttatttagtcattatcaaattgaatcgcaaatcgaatcagcattccagcgtgaagtgcgt
ttgccatcaggtggatcaattgtgattgatgtcactgaagcattaactgcaattgatatc
aactctgcgcgtgcaacccgtgggggggatatcgaagaaacggcattaaatacgaattta
gaagcggcagatgaaattgctcgccaattgcgtttgcgtgacttaggcggtctaattgta
attgattttattgatatgacccctgtgcgtcaccagcgcgaagtagaaaaccgtattcgt
gaagcgactcgtcaagaccgtgcgagaattcaatttggtcgaatttctcgtttcggcttg
cttgaaatgagtcgtcagcgcttaagcccatcattaagtgaagcatcaagtcatgtttgt
cctcgctgtcagggtacgggtaaagtacgtgataatgaatccatcgcactttcaatttta
cgtttagtcgaagaagaagcgattaaagaaaattcagcacaaattcacagtattgtgcca
gtacagattgcaacgtatttacttaatgaaaaacgtaaagcgatcagcgatattgaaaaa
cgtcatgatgtacaagtgattgttgtaccaagtgaaagtatggaaaccccgcactttagc
gtttatcgcctacgtgaaaatgaaattgtgccagcacttagctatgatttagcgaagcgt
tatcaagatcgccaagaagagcaaatgccgcacagccattcagatgaagcgttagttact
cgcaatgaaccggtgatcacagttgaaagcgtgctacaaaatgcggaattaaatattcag
ccagcaccaacgccagttaaaccagctaagccatcgctactgagccgtttctttgcggca
attaaaggtttctttactgaggaagaagagaaagcgccagagaaaaaaccgcgtaataaa
acacgtaatcagcgcgatcgccgtaatcagcgtcgtgaacgcccaaatcgcgagcgtaac
ccagaacgtaatgagcgtaatgctgtgcaagcggttaaaaatgaagaaaaatctgcaaat
attagtgagccgaaaaagcgtcgtgagattgtggaagagattgctggtagctcaccgcaa
gccgagcaacaagcaaaagtagcagaacgccgtcagcgccgtgaactgcgtaaaaaagtg
cgaattgaagcagcaccagcggtggatgcaggagtagttgaacctcgtgttgaaaaaaat
gagctagagacgacatctgtcgcaccggtagcaaatgttacgcttgccgaagtcgtgatt
cctgaggcaaaagccgatacattggaaatgaagggcgaaaatgacaatcgtgaaaatgga
cgtcgtagaatgccacgtcacttacgagtgggtaatcaacgtcgtcgtgagcgtcgtgaa
acaagccaagttgtcgcgccaatgccattaacggctgctgtaatgtcgccagaactggct
agtggtaaagttagtgttgccttagcgaatacaaaagtagaagagaaaccgagtttctta
tctgttgatgagatgctgcagcaagagcaagttgttgttacaacagcagaaacagaaaac
gcgacacatcaagaatctgttcagcctttcgttgatttcgtcactcaaggtacaaaccgt
gacttagtgaaagaaaacaaagagcgtaaagagcaaactcgcgaacaaacggatgagcat
gtcacaaaatcggtaaaaccagaaatgccaactgcacaaccatttggtttagtggttagt
cagccgagtactcgtgatttagtgaaagaaaaccatgagcgtcgtggtattccagcagga
agcgcaaattctgtggcgactcagactgtagcagacacagaacttgcaccaatggacatg
ccaacgtccacttaccaaagtgaataccaatttagcggtaaacttggcacggtgtctcgt
gtagaacatactaccgcagagaaaaccttggctgcagcgccaagtgaagaaatccattta
gttcaactacatgagtggcaacattcaaaatactatttcttcggtaaaggctttggtggg
cacactagcgcaatgagccatgtttattcggttgcgagacagcctgagtaa
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