Bibersteinia trehalosi USDA-ARS-USMARC-188: F542_16140
Help
Entry
F542_16140 CDS
T03017
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
btre
Bibersteinia trehalosi USDA-ARS-USMARC-188
Pathway
btre03030
DNA replication
btre03410
Base excision repair
btre03420
Nucleotide excision repair
btre03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
btre00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
F542_16140
03410 Base excision repair
F542_16140
03420 Nucleotide excision repair
F542_16140
03430 Mismatch repair
F542_16140
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
btre03032
]
F542_16140
03400 DNA repair and recombination proteins [BR:
btre03400
]
F542_16140
Enzymes [BR:
btre01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
F542_16140
DNA replication proteins [BR:
btre03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
F542_16140
DNA repair and recombination proteins [BR:
btre03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
F542_16140
NER (nucleotide excision repair)
GGR (global genome repair) factors
F542_16140
MMR (mismatch excision repair)
DNA ligase
F542_16140
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
F542_16140
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
HHH
PTCB-BRCT
HHH_3
DNA_pol_lambd_f
5_3_exonuc
Motif
Other DBs
NCBI-ProteinID:
AHG82330
UniProt:
A0A4V7IB54
LinkDB
All DBs
Position
1750304..1752316
Genome browser
AA seq
670 aa
AA seq
DB search
MSIQTQLEQLRKTLRNYEYHYHVLDNPLVPDAEYDRLMNELKNLEWQHPEFITPDSPTQR
VGAKPLDGFAQIQHELPMLSLDNAFNEEDLDGFLKRIEDRIGVNANKLEFCCEPKLDGLA
VSILYVDGILTQAATRGDGTTGEDITANIRTIRNIPLKLNTDNPPHRLEVRGEVFMPHNG
FEKLNQTALEKGEKTFANPRNAAAGSLRQLDPKITRQRLLMLNAYSIGIFESDDELPSTH
HARLQWLKELGLAVNNEIRLAKGKQALLDFYHTIGQKRSSLGYDIDGTVLKVNDIALQEQ
LGFISRAPRWAIAYKFPAQEEMTVLNDVEFQVGRTGAITPVAKLEPVFVAGVTVSNATLH
NGDEIERLGISIGDTVIIRRAGDVIPQIVGVVLERRPDFAKKIEFPTACPVCNSAVVRVE
GEAVARCTGGLFCEAQRKEALKHFVSRKAMDIDGVGEKLIEQLMERELVHTPADLFKLDH
TTLMRLERMGEKSAQNALNSIQNAKNTTLARFLFALGIRDVGEATAQNLANHFGTLDKIR
QATFDDLQAVQDVGEVVANRIVRFWQEPHNVEVVEDLIAQGVNWSDVVKQEIADNPLKDK
TVVLTGTLTQLTRDQAKAILQGLGCKVSGSVSSKTDYLIAGEKAGSKLAKAQELGVPVLS
EQDLIQLAKL
NT seq
2013 nt
NT seq
+upstream
nt +downstream
nt
atgagcattcaaacccaattagagcaactgcgtaaaaccttacgcaactatgaatatcac
taccacgttttagataaccctctcgttcccgatgcggagtacgaccgtttaatgaatgag
ctgaaaaatctagaatggcaacaccctgaattcattacgccagattcacctactcagcgt
gtcggagccaaaccactcgatggctttgcccaaattcagcatgaattaccaatgctttct
ctcgacaacgcttttaacgaggaagatttagatggtttcctaaaaaggattgaagatcgt
attggggttaatgccaataaattggaattttgttgcgaaccaaaattagacggtttagcc
gtgagtattctctatgtggacggtattctgacccaagcggcaactcgtggcgatggcact
acaggcgaggatattacggcgaatatccgcactattcgtaacattccgcttaaactcaat
actgacaatccgccacaccgtttagaggtgcgtggtgaagtctttatgccgcataatggt
tttgaaaaactcaatcaaaccgcactagaaaaaggcgaaaaaacctttgccaaccctcgc
aatgcggcagcaggttcgctacgtcagctcgaccctaaaatcactcgccaacgtttgctt
atgcttaatgcttacagtatcggtatttttgaaagtgatgatgaattaccaagcacccat
catgcccgtttacaatggctgaaagagctaggcttagcagtaaacaatgaaattcgcctt
gctaaaggtaaacaagcattacttgatttctatcacactatcggacaaaagcgcagctca
ctcggctatgatattgacggcaccgtgttaaaagtgaacgatattgctctacaagaacag
cttggctttatttctcgtgccccacgctgggcaattgcctataaattccccgcgcaagaa
gagatgacggtactaaacgatgtggaatttcaggtgggcagaacaggggcaattacccca
gtggcaaaattagagccggtatttgtcgcaggcgtaacggtgagcaatgccacactgcac
aatggcgatgaaattgaacggctcggcatttcgattggcgatacggtgattattcgccgt
gcaggtgatgtgattccacaaattgtcggcgtggtcttagaacgacgccctgattttgca
aaaaaaatcgaatttccaaccgcttgtcccgtgtgtaattctgcggtggttcgggtggaa
ggcgaagccgtagcacgttgtactggtggcttattctgcgaagcccaacgcaaagaagcc
ttaaaacattttgtttcccgtaaagcgatggatattgatggcgtaggtgaaaaactgatc
gaacagctaatggaacgtgagttggtgcatacccctgcagatctgtttaaactcgatcac
acgacacttatgcgtttagaacgaatgggcgaaaaatcggcacaaaatgcactaaacagt
atccaaaatgccaaaaatacgacccttgcccgtttcttattcgcactggggattcgtgat
gtcggcgaggcaaccgcacaaaatctagctaaccatttcggtacactagataaaatccgc
caagccacttttgatgatttgcaagccgtgcaagatgtgggcgaagtggtggcaaaccgc
attgtacgtttctggcaagagcctcataatgtggaagtggttgaagacttaattgctcaa
ggggtaaattggtcagatgtggtaaaacaagaaattgcagataaccctttaaaagataaa
actgtcgtgctaacaggcacactcacccaacttacccgagatcaagccaaagctatttta
caaggcttgggctgtaaagtgtctggtagtgtttctagcaaaacggattatctcattgca
ggggaaaaagcaggttcaaaacttgctaaagcacaagagttaggagtgccagtactcagc
gagcaagatttaatccaacttgcaaagctttaa
DBGET
integrated database retrieval system
