Bacillus toyonensis: Btoyo_3019
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Entry
Btoyo_3019 CDS
T02901
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
bty
Bacillus toyonensis
Pathway
bty03030
DNA replication
bty03410
Base excision repair
bty03420
Nucleotide excision repair
bty03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bty00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Btoyo_3019
03410 Base excision repair
Btoyo_3019
03420 Nucleotide excision repair
Btoyo_3019
03430 Mismatch repair
Btoyo_3019
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bty03032
]
Btoyo_3019
03400 DNA repair and recombination proteins [BR:
bty03400
]
Btoyo_3019
Enzymes [BR:
bty01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Btoyo_3019
DNA replication proteins [BR:
bty03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Btoyo_3019
DNA repair and recombination proteins [BR:
bty03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Btoyo_3019
NER (nucleotide excision repair)
GGR (global genome repair) factors
Btoyo_3019
MMR (mismatch excision repair)
DNA ligase
Btoyo_3019
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Btoyo_3019
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
RNA_pol_A_CTD
HHH
PTCB-BRCT
BRCT_2
RNA_ligase
HHH_3
5_3_exonuc
Motif
Other DBs
NCBI-ProteinID:
AHA08933
LinkDB
All DBs
Position
2936807..2938816
Genome browser
AA seq
669 aa
AA seq
DB search
MSKEIAKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIKLEAENPEFMSEDSP
SVRVGGTVLDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVRQGIDDANVRYICELKIDGL
AVSLHYEKGRFIQGATRGDGITGEDITQNLKTIKAIPLRLNEEVTLEARGEAYMPKRSFV
KLNEEKEQNGEDVFANPRNAAAGSIRQLDTKIAAKRNLSMFVYGLANVEEKTISSHSESL
DFLGELGFKTNPNRRTCETIEEVIAYVEEWQEKRPNLDYEIDGIVIKVDDVALQESLGTT
AKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIVRRASLHNEDL
IREKDIRIGDYVVVKKAGDIIPEVVNVIFDKRTGEEEEYRMPTHCPACESELVRLEEEVA
LRCINPTCPAQIREGLIHFVSRNAMNIDGLGERVITQLFDADYIRTFADLYALTKEQLLQ
LERFGEKSATNLIQAIENSKENSLERLLFGLGIRHVGAKAARTFAEHFETMDALVKATEE
ELKSINEIGEKMAQSVVTYFDNEDVLELLQQFKEYGVNMTYKGIKSADLQNVESYFAGKT
VVLTGKLEVMGRSEAKKKIEALGGKVTGSVSKSTDLVVAGEAAGSKLAQAEKHNVEVWNE
ERFLQELNK
NT seq
2010 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaaagagatagcaaaaaaacgtatagaagaactacgtgatttgttaaatacattt
aactatcaatatcacgtattagacaatccttctgtttctgatgcggagtatgaccgtaat
atgcaggagcttataaaattagaagcagagaatccagagttcatgagtgaagactctccc
tccgtgcgcgttgggggaactgttcttgatatatttgaaaaagtaacgcataagtcaccg
atgttaagtttaggaaatgcatttaacgaaggagatttgcgtgattttgaccgaagagta
cgtcaaggaattgatgatgcgaatgtaagatatatatgcgaattaaaaattgacggactt
gctgtttcacttcattatgaaaaaggacgctttattcaaggtgcaacacgtggtgatggt
ataacaggtgaagatattacccaaaacttgaaaacgattaaagcaattccacttcgatta
aatgaagaggtaacgttagaagcgcgaggcgaggcttatatgccgaagcgttcattcgtt
aaactaaatgaagaaaaagagcaaaacggtgaagatgtatttgcgaatccgcgtaatgcg
gcagcaggttcaatacgtcaacttgatacgaaaattgcagcaaagcgtaacctatccatg
tttgtatatggtcttgcaaatgtagaagaaaaaacaatttcatcgcatagcgaatcactt
gatttcttaggtgaactggggtttaagacaaatccaaatcgccgtacatgtgaaacaatt
gaagaggttatagcttatgtagaagaatggcaggaaaaacgtccgaatcttgattatgag
attgatgggatcgttataaaagtagacgatgttgctcttcaagaaagcctaggaactact
gcaaagagtccaagatgggcgattgcttataaattcccggctgaagaagttgtaacgaga
ttaacgggcattgaattaagtgttggccgtacaggggttgtaacaccgactgcagagtta
gaaccagtacgagtggctggtacgatcgttcgtcgtgcttccttacataacgaggattta
attcgtgaaaaagacattcgaattggtgactacgttgttgtgaaaaaggctggagatatt
attcctgaggttgtgaacgttatttttgataagcgtactggtgaggaagaagaataccgc
atgccaacgcattgtccggcatgtgagagtgaactagttcgtttagaagaagaggttgca
cttcgttgtataaatccaacttgtcctgcccaaattcgcgagggattaattcatttcgtt
tcaagaaatgcaatgaatattgacggacttggcgagcgtgtcatcacacagctctttgat
gcagattatattcgtacgtttgcagatttatatgcattgacgaaagaacaattactacag
ctagagcgttttggtgaaaaatcagcaacaaatttaatacaagcaattgagaattcgaag
gaaaactcgttagagcgattattatttggccttggaattcgccatgtcggggcgaaagca
gcacgtacatttgcagagcattttgaaacgatggatgcacttgtgaaagcgacggaagaa
gagctaaaatcaattaatgaaattggagaaaaaatggcgcaatccgttgtgacatatttt
gataatgaagatgtattagagctattacaacagtttaaagagtatggcgtgaacatgaca
tacaaaggcataaaaagtgcagatttacaaaatgttgaatcttactttgcagggaaaact
gtcgtcttaactgggaaattagaagtgatgggacgcagtgaagcgaagaagaagattgag
gcattaggtggaaaagtaacaggaagtgttagtaaaagtacggatttagttgttgctggt
gaagctgctggctcaaaattagcgcaagcagagaagcacaatgttgaagtttggaatgaa
gagaggttcttacaagagctaaataagtaa
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