Buchnera aphidicola LL01 (Acyrthosiphon pisum): CWO_01535
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Entry
CWO_01535 CDS
T01828
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
bua
Buchnera aphidicola LL01 (Acyrthosiphon pisum)
Pathway
bua03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bua00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CWO_01535
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bua03400
]
CWO_01535
Enzymes [BR:
bua01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CWO_01535
DNA repair and recombination proteins [BR:
bua03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CWO_01535
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
ERCC3_RAD25_C
dATP-dGTP_PPHyd
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
ADP66113
LinkDB
All DBs
Position
complement(323798..326080)
Genome browser
AA seq
760 aa
AA seq
DB search
MTEEKSLKKILRFLMRHKIHPQYIKRIIDIKKEIDYFYMIEEIKNGFIDKKNNILFLCTK
DLLPILINDKYISNIKKNTNNINKFNLSQLILNHPVMHIEHGIGRYKGLTTIETASIQSE
YLVISYAEGDKLYVPVSNLHLVSPYTGTSIENAPLHKLGGDDWNKEKHKISKTVYDHAAQ
LLHIYAKRESKTGFAFKKNIEKYDLFCNDCSFKTTSDQNEVMKFVLKDMSKPIPMDRLIC
GDVGFGKTEIAMRASFLAVSNKKQVAILVPTTLLAQQHYKNFKIRFSNWPVNINILSRFQ
TQKEQDLIFKHTKNGRINIIIGTHKLLFKNIEWCSLGLLIIDEEHRFGVSHKEIIKKIYS
NIDILTLTATPIPRTLNMAMTGIKDLSIIAKPPAQRLAIKTFIQEYSPILIRKTILREIS
RGGQVYYIYNKVQNIMNIAERLSILIPEASIKIGHGQMKNIDLKKVMNEFYNNKFNVLIC
TTIIESGVDIARANTIIIENSDHFGLSQLHQLRGRIGRSNNQAYALLLVNNFNKITSDAK
KRLEAISSVDNFGGGFSLSNQDLEIRGVGEILGKEQSGHIKNIGFSLYMDLLKNAIDLLK
NGKIFSVEKSLKKPLEIDLHVSSLLPSSYILDINTRLFFYKKLANAIHEKQIEEIKYELI
DQFGKLPDFSKNLILIAKIRLIADKIGIKYIKSNNNIGIIEFNDYGSINTEYLLKMFQKE
PKIWKMETSTRIKFILHLKNDYLRLKWIINLLRNLFKKNI
NT seq
2283 nt
NT seq
+upstream
nt +downstream
nt
ttgacagaagaaaaatctttaaaaaaaattttaagatttttaatgagacataaaatacac
ccacaatatattaaaagaattattgatattaagaaagaaattgattatttttacatgata
gaagagatcaaaaatggatttatagataaaaaaaataatattttatttctttgtacaaaa
gatttgttgccaatattaattaatgataaatatattagtaatataaaaaagaatactaac
aatattaataaatttaacttatctcaattgattttaaatcatccagttatgcatattgaa
cacggtattggaaggtataaaggattaacaactatagaaactgctagtatacaatctgaa
tatcttgttatttcatatgcagaaggggataaattatatgtaccggtttcaaatctacat
cttgtctcaccttataccggaacatctatagaaaatgctcctcttcacaaattaggtggt
gatgattggaataaagaaaaacataaaattagtaaaacggtttacgatcatgcagcacaa
ttactacatatttatgcaaaaagagaatctaaaacaggttttgcatttaaaaaaaacata
gaaaaatatgacttgttttgtaatgactgttcttttaaaacaacatcagatcaaaatgaa
gtaatgaagttcgtactaaaagacatgtctaaaccaattcctatggatcgtttaatttgt
ggtgatgtcggtttcggaaagactgaaatagcgatgcgtgcttcttttttagctgtatct
aataaaaaacaagtagctattttagtgccaactactttattagcacaacaacactataaa
aatttcaaaattcgtttttctaattggcctgttaatattaatatattatctagatttcaa
acacaaaaagaacaagatttaatttttaagcatactaaaaacggacgaattaatataata
ataggtactcataaactgctatttaaaaatatagaatggtgtagtctcggactattaatt
attgatgaagaacataggtttggcgtgagtcataaagaaattataaaaaaaatatattct
aatattgatatactgactttaacagctacgcctatacctcgtactttaaatatggctatg
actggtataaaagatctatctattatagcaaaacctccagctcaaagattggcaattaaa
acttttattcaagaatatagtcctatattaataagaaaaacaatactacgtgaaatatca
agaggcggtcaagtttattatatatataataaagttcaaaatatcatgaacatcgctgaa
agattatcaatattaattcccgaagctagtattaaaataggtcatggacaaatgaagaat
atagatttaaaaaaagtcatgaatgaattttacaacaataaattcaatgtcttgatttgt
actacgattattgaaagtggtgttgatatagcaagagctaatacaattattattgaaaat
tctgatcattttggattatctcaattacatcaacttcgcggacgtattggtcgatcaaat
aatcaagcatatgctttattacttgtcaataattttaataaaatcacttcagatgccaaa
aaaagattagaagcaatttcatcagttgataattttggtggaggtttttctctatctaat
caagatttagaaattagaggagtaggtgagatactaggtaaagaacaaagcggacatata
aaaaatataggtttttctttatatatggacttgttgaaaaatgctattgatttactaaaa
aatggaaaaattttttctgttgaaaaatcattaaaaaaaccattagaaattgatttacat
gtatcttccctactacctagtagttatatattagacattaatacaagattatttttttat
aaaaaactcgccaacgctatacatgaaaaacaaatagaagaaataaaatatgaactaatt
gatcaatttggtaaactacctgatttttctaagaatttaattctaattgctaaaattcga
ttaatagcagataaaattggtattaaatatattaaatctaataataacataggcataata
gaatttaatgattatggttctataaatactgaatatttactgaaaatgtttcaaaaagaa
ccaaaaatctggaaaatggaaacttctacaagaataaaatttattttgcatttaaaaaat
gattatttgcgtctcaagtggattattaatttattaagaaatttatttaaaaaaaatatt
taa
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