Burkholderia sp. CCGE1001: BC1001_2560
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Entry
BC1001_2560 CDS
T01424
Name
(GenBank) ribonuclease, Rne/Rng family
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
bug
Burkholderia sp. CCGE1001
Pathway
bug03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bug00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BC1001_2560
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bug03019
]
BC1001_2560
03009 Ribosome biogenesis [BR:
bug03009
]
BC1001_2560
Enzymes [BR:
bug01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
BC1001_2560
Messenger RNA biogenesis [BR:
bug03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BC1001_2560
Ribosome biogenesis [BR:
bug03009
]
Prokaryotic type
rRNA processing factors
BC1001_2560
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
ADX55976
LinkDB
All DBs
Position
1:2921897..2925139
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AA seq
1080 aa
AA seq
DB search
MKRMLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGIITRIEPSLEACFVNY
GEDRHGFLPFKEVARQYFRDGVDMRSARIQDALKEGQELIVQVEKEERGNKGAALTTFIS
LAGRYLVLMPNNPRGGGVSRRIEGDDRQELRETMAQLQLPEGMSIIARTAGIGRSAEELQ
WDLNYLMQLWRAIEAASQSGSAGQPMLIYLESSLVIRAIRDYFQPDIGEILIDTTEIHDQ
ARAFMDIVMPDNVGKVKRYHDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALV
AIDVNSARATKGADIEETAARTNLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVE
QRLKDALKHDRARVQMGKISRFGLMELSRQRLRPALSEGSHVTCPRCNGTGHIRDTESSA
LQVLRIIQEEAMKENTAAIHCQVPVEVTAFLLNEKRSEINKIESRFKVNVVLVPNKHLDT
PHYKLERLRHDDARLDDPRASWKMAEEAAREMESETGYSKRTEEVKPKQEAAVKGITPEK
PAPSAPVRPAAEPAPVAATPASGGFIGWLKNLFGMQPAAPAPVVPATPEKQARPQRGERQ
ERGERGGDRNRNRRGGAGPRDAAARPEGTNGGRQSQQPSQRREEREPREGREAREPREAR
EAREAREPRGSREGREARELREARESRDNRDNRDNRGGDRAETAENAPRGERQERGERRE
RGERAERGERRKQQAESADALTQADTQAAEELVQNQAAVTENAAPADQEAVAREGEERRR
RRRGRRGGRREREEDVNGNLAADVAEAEGDNVNVSEEAPLRAAQQPAERKPEANEAAVAK
EMAPVEVVVAAVATEQAVVTELHAATETPALAAEKAAKTETIVPVAEVPAAPAAVEPVAE
VPVAQAATPVEPAQTAPAAAETVSLVEPVVREQAAEVQATPVQAQPAAPAEVVAAPAAEV
APQAEIVEPKPAVTAAAPAVEPAAAAAAPQAHQAATAEEAPQTAQPSQAAFNGGISAEAL
KPVLEKAGLVWVNTDADKLRAAQEAAAQTVKPPRVVRERRPLPPADSTPMQQVETVRHPQ
NT seq
3243 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgcatgttgttcaatgcgacgcagcaggaagagttgcgcgtcgccatcgtcgat
gggcaaaaactcatcgacatcgacatcgaaaccgccgggcgcgaacagcgcaaaggcaat
atttacaagggcatcattacccgcatcgagccgtcgctcgaagcctgcttcgtcaactac
ggcgaagatcgccacggcttcctgccgttcaaggaagtcgcccgccagtatttccgcgac
ggcgtcgacatgcgctccgcgcgcatccaggacgccctgaaggaaggccaggaactgatc
gtccaggtcgaaaaggaagagcgcggcaacaagggcgcagcgctcaccacgttcatctcg
ctcgccggccgctacctggttctgatgccgaacaacccgcgcggcggcggcgtgtcgcgc
cgtatcgagggcgacgaccgtcaggaactgcgcgaaaccatggcgcagctgcagttgccc
gaaggcatgagcatcatcgcgcgcacggccggcatcggccgcagcgccgaagaactgcag
tgggacttgaactacctgatgcagctgtggcgcgccatcgaagccgcgtcgcaaagcggc
tcggcgggtcagcctatgctgatctatctcgaatcgagcctcgtgatccgcgcgattcgc
gactatttccagccggatatcggcgaaatcctgatcgacaccacggaaattcatgaccag
gcgcgcgccttcatggacatcgtgatgccggacaacgtcggcaaggtgaagcgttaccac
gacgacgtaccgctcttctcgcgcttccagatcgagcatcagatcgaaacggcgtattcg
cgcacggtgccgctgccgtcgggcggcgcgatcgtgatcgaccacaccgaagcgctcgtc
gcgatcgacgtcaactcggcccgcgccaccaagggcgcagacatcgaggaaaccgcagcg
cgcaccaacctcgaagccgccgacgaagtcgcgcgccagttgcgcctgcgcgacctgggc
ggcctgatcgtgatcgacttcatcgacatggaatcggccaagagccagcgcgaagtcgag
cagcgtctgaaagacgcgctcaagcacgaccgcgcgcgcgtccagatgggcaagatttcg
cgcttcggcctgatggaactgtcacgccagcgtctgcgtccggctctgtcggaaggcagc
cacgtgacctgcccgcgctgtaacggcacgggccacatccgcgataccgaatcgtccgcg
ctgcaagtgctgcggatcattcaggaagaagcgatgaaggaaaacaccgcggcaatccat
tgccaggtgccggtcgaagtgaccgccttcctgctgaacgaaaagcgctcggagatcaac
aagatcgagtcgcgcttcaaggtcaacgtcgtgctggtgccgaacaagcatctcgacacg
ccgcattacaagctggagcgtctgcgtcacgacgacgcgcgcctcgacgatccgcgcgcg
tcgtggaaaatggccgaggaagcggctcgcgagatggagtcggaaaccggctacagcaag
cgcaccgaagaagtgaagccgaagcaggaagcggcggtcaagggcatcacacctgaaaag
ccggcgccgagcgcaccggttcgtccggcggcagaaccggctcccgtggcggcgacgccg
gcgagcggcgggttcatcggctggttgaagaatctgttcggcatgcagccggcggcgccg
gcgcctgtcgtaccggccacgcccgaaaagcaggcacgtccgcaacgcggcgagcgccag
gagcgcggtgagcgcggcggcgaccgcaaccgtaaccgccgtggcggcgcgggcccccgc
gatgccgcggcacgcccggaaggcacgaacggcggccgtcagagccagcagccgtcgcag
cgccgtgaggaacgcgaaccgcgcgaaggtcgtgaagcacgtgaaccgcgcgaggcacgt
gaagctcgtgaggcgcgcgaaccgcgcggcagccgcgagggacgcgaagcacgcgagctg
cgtgaggcccgtgagagccgcgacaatcgtgacaatcgcgacaatcgcggtggcgaccgt
gccgaaacggcagaaaacgcgccgcgcggcgaacgtcaggaacgcggtgagcgccgtgaa
cggggcgagcgcgctgagcgcggcgagcgtcgcaagcagcaggcggaaagcgcggatgcc
ttgacgcaagccgacacgcaagccgcggaagaactggtgcaaaaccaggccgccgtcacc
gaaaatgctgcgccggccgatcaggaagccgtggcgcgcgagggtgaagagcgtcgtcgc
cgccgtcgcggccgtcgcggcggtcgtcgcgagcgcgaagaggacgtgaacggcaacctg
gctgcggacgtcgcggaagccgagggcgacaacgtcaacgtcagcgaagaagccccgctg
cgtgcggctcagcagccggcggaacgcaagccggaagcaaacgaagccgccgtagccaag
gaaatggcgccggtggaagtcgtcgtggcggctgtcgcgaccgagcaggctgtggtcacc
gagctgcatgcggctacggaaacaccggctctcgccgccgaaaaggccgcgaagacggaa
accatcgtgccggtcgctgaagtgccggcggctccggctgctgtcgagccggtcgcagag
gtgcccgtcgcgcaagctgccacgccggtggaaccggcgcagacagcgcctgcggctgcg
gagacggtgtcgctggtggaaccggtcgttcgcgaacaggcggccgaggtgcaagccacg
ccggttcaggcgcagcccgccgctcccgctgaggtcgttgcagcgccggccgctgaagtc
gcgccgcaagcggaaatcgtcgagcccaagccggctgtaaccgcagccgcgccggcggtc
gaaccggccgctgcagccgccgcgccgcaagcgcatcaagccgcgacggcagaggaggcg
ccgcaaaccgcgcagccgtcgcaggcagcgttcaatggcggcatttcggccgaagcgctg
aagccggtgctggaaaaagcggggctcgtctgggtcaataccgacgccgacaagctgcgc
gccgcgcaggaagcggctgcccagaccgtgaaaccgccgcgtgtcgtgcgcgagcgcagg
cccttgccgcccgccgacagcacgccgatgcagcaggtggaaacggtgcgacatccgcag
taa
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