Candidatus Blochmanniella vafra: BVAF_462
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Entry
BVAF_462 CDS
T01398
Symbol
sbcB
Name
(GenBank) exodeoxyribonuclease I
KO
K01141
exodeoxyribonuclease I [EC:
3.1.11.1
]
Organism
bva
Candidatus Blochmanniella vafra
Pathway
bva03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bva00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
BVAF_462 (sbcB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bva03400
]
BVAF_462 (sbcB)
Enzymes [BR:
bva01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.1 exodeoxyribonuclease I
BVAF_462 (sbcB)
DNA repair and recombination proteins [BR:
bva03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
BVAF_462 (sbcB)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
BVAF_462 (sbcB)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
BVAF_462 (sbcB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_X-T_C
RNase_T
APG6_N
DUF2989
Motif
Other DBs
NCBI-ProteinID:
ADV33848
UniProt:
E8Q724
LinkDB
All DBs
Position
518921..520396
Genome browser
AA seq
491 aa
AA seq
DB search
MTLLQNQPNFFIYDYETFGLNPALDRPAQFAGIRVDDKLCPIAKKEIFFCQIPHDYLPNP
ESVLTTGITPQYTLQYGLTESEFAYRIFNIFNKPNTCIVGYNNINFDDEFTRHTFYRNFC
DPYLWAYNHGNSRWDLLPILRAYYSLYPEKIYWPINNKNKISFRLIDLTYANHIEHLNVH
DAMSDVYATLEIMKLTQKTHPYFFQFLYNHRTKDQLKKIINFDFIDPLIFISNTINDTYN
NFIKFLAPISWHPNNKNILIAYDLNSKPDLLLNLNINKLYQNLYQGTQNLSDLFKQIPLQ
LIKLNSCPILIPIHLIKKENIFYYKNSLFSYYQYCLKNLNFIQTNINHTYLKNKIKTFYT
TIESYFKLKQTYQKVHVDNQLYFKFFNFSDRQLINKIRNTNIQQLSKIKINSTDTRLKLL
FFFYKARNFPYSLNVKEQKSWLDYKRLLLQQSKFQNYLTNIDNLLLHQNNLIQINLLHKL
KQYYKHYLNTI
NT seq
1476 nt
NT seq
+upstream
nt +downstream
nt
atgactttacttcaaaatcaacctaatttttttatttacgattacgaaactttcggacta
aatccagccctagatcggcctgctcaattcgcaggaatacgagtcgatgataaattgtgt
ccaatagctaaaaaagaaatttttttttgccaaataccccatgattatcttcccaatcca
gaatctgttcttactacaggaatcactcctcaatatactttacaatatggtttaacagaa
tcagagttcgcatatcgtatctttaatatttttaacaaaccaaacacatgtatagttgga
tataataatatcaattttgatgatgaatttacccgacacactttttatagaaatttttgt
gatccttatttatgggcatataatcatggaaattctagatgggatttattacctatatta
agagcttactattctctatatcctgagaaaatctattggcctatcaacaacaaaaataaa
attagttttcgactaattgacttaacatacgctaatcacatagaacatttaaacgttcat
gatgcaatgtctgatgtatatgctaccttagaaattatgaaactcacacaaaaaactcac
ccatatttttttcaatttttatataatcaccgtactaaagatcaattaaaaaaaataatc
aattttgattttattgatcctttaattttcatttctaatacaataaacgatacatataac
aactttataaaatttttagcacctatctcttggcaccctaacaataaaaatattcttata
gcctacgatttaaatagcaaaccagacttattattaaatttaaacataaacaaactatat
caaaacttatatcaaggcacacaaaacttatctgatctttttaaacaaatcccattacaa
ttaatcaaactcaattcgtgtcctattttaattccaattcatctgattaaaaaagaaaac
atcttttattataaaaattctttattttcttattatcaatattgtttaaaaaatttaaac
ttcattcaaacaaacataaatcatacttatttaaaaaacaaaatcaaaacattttacaca
acaattgaatcttatttcaaactaaaacaaacatatcaaaaagttcatgtagataatcaa
ttatatttcaaatttttcaatttttctgatcgtcaactaattaataaaattcgcaacact
aacatacaacaattatctaaaataaaaataaatagtactgatacgcgtctaaaactgtta
ttttttttttataaagctcgaaattttccttacagcctgaatgtaaaagaacaaaaatca
tggctagactataaacgtctactacttcaacaaagcaaattccaaaattatctaaccaat
attgataatcttctattacatcaaaataatttaattcaaattaatctcttacacaaatta
aaacaatattataaacactatttaaatactatttaa
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