Burkholderia vietnamiensis LMG 10929: AK36_6001
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Entry
AK36_6001 CDS
T03893
Name
(GenBank) RNA polymerase sigma factor, sigma-70 family protein
KO
K03086
RNA polymerase primary sigma factor
Organism
bve
Burkholderia vietnamiensis LMG 10929
Pathway
bve02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
bve00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
AK36_6001
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bve03021
]
AK36_6001
Transcription machinery [BR:
bve03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
AK36_6001
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r3
Sigma70_r4
Sigma70_r1_2
Sigma70_ner
Sigma70_r1_1
Sigma70_r4_2
HTH_25
Motif
Other DBs
NCBI-ProteinID:
AJY08471
LinkDB
All DBs
Position
III:1153371..1155254
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AA seq
627 aa
AA seq
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MPARPAPRRAPVPVRAAGHDGDAPPHAAHLHALISTGLTRGFVTHGDIIDALPDDDAHQG
GVDATAAMLRELGIAVSDGAHAAGWTLDRYFQPTPSARAWAEGAGALAAAELSAPRTTDP
VRLYLREMGMTPLLTRDEEIMHARRIERGRAASVAVLCGDPQALDALVAMRIEIAEGRSA
ASAYVLSIADSADIAPADGAAASPHAGDTPADAGASTRDDDAPADDGLCRHAVLARLAPI
DALAAAMRAALETDGAHGLAYRACVREAAALLGTLRMSMRALERMSEPLRTHARRQRTLH
GRLARTLADAGVPHGAAAACVQRDGDHAGWLAACIAAHPECALALTRRAAELVDARDAIA
RAARTSPLPPDTIALLDARLDTIERAMQPARMGLFDANLRLVVSIAKRYPDRGLPFADLI
QEGNIGLLKAIDRYDHRRGFRFSTYATWWIRQAITHALADLGRTIRVPTHTVDAINKLTR
IAREHRQRSGAAATPHELAVQMGEPLDKVRDLMSIVKEPMSADAPVSPEGEMTFVDVAPD
VSTPSPEDAAGAAQLRDTIAAMIGRLPAREATVLRLRYGLHADEGCSLRDIGRQLNLSAE
RVRQIEASALARLRASDGLDVLRAFIA
NT seq
1884 nt
NT seq
+upstream
nt +downstream
nt
ttgccggcgcgcccggcgccacggcgcgcgccggtgccggtgcgcgccgccggccacgac
ggcgacgcgccgcctcacgcggcgcacctgcacgcactgatttcgacggggctcacacgc
ggcttcgtcacgcacggcgacatcatcgacgcgttgccggacgacgacgcccatcagggc
ggcgtcgacgcgacggccgcgatgctgcgcgagctgggcatcgcggtgtcggacggcgcg
cacgccgcgggctggacgctcgaccgttacttccagcccacgccgagcgcgcgtgcgtgg
gccgaaggggccggcgcgctcgccgcggccgagctcagcgcaccgcgcacgaccgacccc
gtacgcctctacctgcgcgagatgggcatgacgccgctgctcacgcgcgacgaggagatc
atgcacgcgcgacggatcgagcgcggccgcgcggcgtcggtcgcggtgctgtgcggcgat
ccgcaggcactcgacgcactggtcgcgatgcgcatcgagatcgccgaaggccggagcgcc
gcgtccgcctacgtgctgtccatcgcggatagcgcggacatcgcgcccgccgacggcgcc
gccgccagcccgcatgcgggcgatacgccggccgacgcgggcgcgagcacgcgcgacgac
gacgctccggccgacgatgggctctgccgtcatgccgtgctcgcgcgactggcgccgatc
gacgcgctcgcggccgcgatgcgcgccgcactggaaaccgacggcgcgcacggtctcgcc
taccgcgcctgcgtgcgcgaagcggccgccctgctcggcacgctgcgcatgtcgatgcgc
gcactcgagcgcatgagcgagccgctgcgcacgcacgcgcgccggcagcgcacgctgcac
ggccggctcgcacgcacgctcgccgacgccggcgtgccgcacggcgcggcggccgcgtgc
gtgcagcgcgacggcgatcacgccggctggctcgcggcgtgcatcgccgcgcatcccgaa
tgcgcgcttgcgctgacgcgccgcgcggccgagctggtcgacgcgcgcgacgcgatcgcg
cgggccgcgcgcacctcgccgctgccgcccgacacgatcgcgttgctcgatgcgcggctc
gacacgatcgagcgcgcgatgcaaccggcgcggatgggcctcttcgacgcgaacctgcgg
ctcgtcgtatcgatcgcgaagcgctacccggaccgcgggctgccgttcgcggacctgatc
caggaaggcaacatcgggctgttgaaggcgatcgaccgctacgatcaccggcgcggcttc
cgcttctcgacctacgcgacctggtggatcaggcaggcgatcacgcacgcgctcgccgat
ctcggccgcacgatccgcgtgccgacgcacaccgtcgacgcgatcaacaaactgacgcgg
atcgcgcgcgaacaccggcagcgttccggcgctgccgcgacgccgcacgaactggccgtg
caaatgggcgagccgctcgacaaggtgcgcgacctgatgtcgatcgtgaaggagccgatg
tcggccgacgcgcccgtctcgccggaaggcgagatgaccttcgtcgacgtcgcgccggac
gtatcgacgccgtcgcccgaagacgccgccggcgcggcgcagctgcgcgacacgatcgcg
gcgatgatcggccgcctgccggcgcgcgaggcgaccgtcctgcggctacgctacgggctg
cacgcggacgaaggctgctcgctgcgcgacatcggccgacagctgaacctgtccgccgaa
cgcgtgcggcagatcgaggcgtcggcgctcgcgcggctgcgcgcgtccgacgggctcgac
gtgctgcgcgcgttcatcgcatag
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