Barnesiella viscericola: BARVI_00555
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Entry
BARVI_00555 CDS
T02986
Name
(GenBank) RNA polymerase sigma factor rpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
bvs
Barnesiella viscericola
Pathway
bvs02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
bvs00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
BARVI_00555
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bvs03021
]
BARVI_00555
Transcription machinery [BR:
bvs03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
BARVI_00555
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Sigma70_r4
Sigma70_r2
Sigma70_r3
Sigma70_r1_2
Sigma70_r4_2
GerE
Motif
Other DBs
NCBI-ProteinID:
AHF11592
UniProt:
W0ELC7
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All DBs
Position
complement(139199..140059)
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AA seq
286 aa
AA seq
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MRQLKITKSITNRESASLDKYLQEIGREDLITVEEEVELAQRIKKGDHAALEKLTRANLR
FVVSVAKQYQNQGLSLPDLINEGNLGLIKAAEKFDETRGFKFISYAVWWIRQSILQALAE
QSRIVRLPLNQVGSLNKISKALSKFEQENERRPSPEELAEELDIPVDKISDTLKVSGRHI
SVDAPFVEGEDNSLLDVLVNDDSPIADRSLINESLSKEIDRALKQLTPRESEIIKMFFGI
GCQEMTLEEIGDKFGLTRERVRQIKEKAIRRLRTASRSKLLKTYLG
NT seq
861 nt
NT seq
+upstream
nt +downstream
nt
atgagacaattaaaaattaccaaatcgattactaatcgggaaagtgcttctctggacaaa
taccttcaagaaatcggtcgtgaggacttaatcacggtagaagaggaagttgaacttgcc
caacgcataaaaaaaggcgaccatgcagctttggagaagttgacgagagccaacttgcgt
tttgtcgtttcggttgccaaacaatatcaaaaccaaggattgagcctgcccgacttgatt
aacgaaggaaatctgggactgatcaaagccgccgagaaattcgacgaaacaagaggattc
aaattcatctcttatgccgtgtggtggattcgccaatccatactccaagctctggccgag
caatcgagaatcgttcgtctgccgctgaaccaggtgggctcgctcaacaaaataagcaag
gccctctcgaaattcgagcaggagaacgagcgtcgtccttcacccgaagagttggccgag
gagttggatattccggtcgacaaaatctccgacacgttgaaggtatcgggtcgtcacatc
tcggtcgatgccccctttgtcgaaggcgaggacaacagcctgctcgacgtgctggtcaac
gacgactcccccattgccgaccgttcgcttatcaacgagtcactctcgaaagagatagac
cgtgcactcaaacaactcaccccgcgtgaaagcgaaatcatcaagatgttcttcggcatc
ggttgtcaagagatgacactcgaagagataggcgacaaattcgggttgacccgtgaacgc
gtacgccaaatcaaggagaaagccatcagacggctcagaaccgcatcgagaagcaaatta
ttaaaaacctatttgggataa
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