Bacillus amyloliquefaciens XH7: BAXH7_00115
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Entry
BAXH7_00115 CDS
T01836
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
bxh
Bacillus amyloliquefaciens XH7
Pathway
bxh03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
bxh00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
BAXH7_00115 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bxh03021
]
BAXH7_00115 (rpoC)
03400 DNA repair and recombination proteins [BR:
bxh03400
]
BAXH7_00115 (rpoC)
Enzymes [BR:
bxh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
BAXH7_00115 (rpoC)
Transcription machinery [BR:
bxh03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
BAXH7_00115 (rpoC)
DNA repair and recombination proteins [BR:
bxh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
BAXH7_00115 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_3
RNA_pol_Rpb1_2
RNA_pol_Rpb1_4
Apocytochr_F_C
Peptidase_M23
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
AEK87267
LinkDB
All DBs
Position
115868..119467
Genome browser
AA seq
1199 aa
AA seq
DB search
MLDVNNFEYMNIGLASPDKIRSWSFGEVKKPETINYRTLKPEKDGLFCERIFGPTKDWEC
HCGKYKRVRYKGVVCDRCGVEVTRAKVRRERMGHIELAAPVSHIWYFKGIPSRMGLVLDM
SPRALEEVIYFASYVVTDPANTPLEKKQLLSEKEYRAYLDKYGNKFQASMGAEAINKLLQ
DIDLVKEVDMLKEELKTSQGQRRTRAIKRLEVLEAFRNSGNKPSWMILDVLPVIPPELRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPSIIVQNEKRMLQEAVDALIDNGR
RGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPHLKMYQCGLPKE
MALELFKPFVMKELVEKGLAHNIKSAKRKIERVQPEVWDVLESVIKEHPVLLNRAPTLHR
LGIQAFEPTLVEGRAIRLHPLVCTAYNADFDGDQMAVHVPLSAEAQAEARILMLAAQNIL
NPKDGKPVVTPSQDMVLGNYYLTLERAGAVGEGMVFKNTDEALLAYQNGYVHLHTRVAVA
ANSLKNVTFTDEQRSKLLITTVGKLVFNEILPESFPYMNEPSKSNIEEKTPDRFFLDKGA
DVKAVIAEQPINAPFKKGILGKIIAEIFKRFHITETSKMLDRMKNLGFRYSTKAGITVGV
SDIVVLDDKQEILEEAQSKVDNVMKQFRRGLITEEERYERVISIWSSAKDVIQGKLMKSL
DEVNPIYMMSDSGARGNASNFTQLAGMRGLMANPAGRIIELPIKSSFREGLTVLEYFIST
HGARKGLADTALKTADSGYLTRRLVDVAQDVIIRETDCGTDRGILAKPLKEGTEIIERLE
ERLIGRFARKQIKHPETGAVLINENELIDEDKALEIVEAGIEEVWIRSAFTCNTPHGVCK
RCYGRNLATGTDVEVGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRIQELF
EARNPKGQATISEIDGTIAEINEVRDKQQEIVVQGAVETRSYTAPYNSRLKVAEGDQITR
GQVLTEGSIDPKELLKVTDLTTVQEYLLHEVQKVYRMQGVEIGDKHVEVMVRQMLRKVRV
IDAGDTDVLPGTLLDIHQFTEANKKVLLEGNRPATGHPVLLGITKASLETDSFLSAASFQ
ETTRVLTDAAIKGKRDELLGLKENVIIGKLVPAGTGMMNYRKVKPVSNVQPAEDMVPAE
NT seq
3600 nt
NT seq
+upstream
nt +downstream
nt
ttgctagatgtgaacaattttgagtatatgaacatcggtcttgcttcaccggataaaatc
cgttcatggtcttttggtgaagtgaaaaagcctgaaacgataaactatcgtacgttgaaa
cctgaaaaggacggcctgttctgcgaacgcattttcggaccgactaaggactgggaatgt
cattgcggcaagtacaagcgggttcgttataaaggcgtagtttgtgaccgttgcggagtt
gaagtaacgcgggctaaagtccgtcgtgagagaatggggcatattgaactggctgccccg
gtttctcacatttggtatttcaaaggtattccgagccgtatgggtcttgtattggatatg
tcaccgcgtgcgctggaagaagtcatttactttgcttcttacgtcgtaactgacccggcc
aatacaccgctcgaaaagaaacagcttttatctgaaaaggaataccgtgcgtatctggat
aagtacggaaacaaattccaagcctctatgggtgcggaagccattaataaacttctgcag
gacatcgacctcgtcaaagaagttgatatgttaaaagaagagctgaaaacctctcaagga
cagcgccgtacgcgtgcgatcaaacgccttgaagtgcttgaagccttccgtaattcagga
aacaagccgtcttggatgatcctcgatgtgcttccggttattccgcctgagttaagaccg
atggttcagcttgacggcggacgtttcgcaacgtctgacctgaacgacctttaccgtcgt
gtcatcaaccgtaacaaccgtttaaaacgtctgttagacctcggtgctcctagcatcatc
gttcagaacgaaaaacgtatgcttcaggaagcagtcgatgctctgattgacaacggacgc
cgcggccgtccggttaccggaccgggtaaccgtccgctcaaatctctttctcatatgctg
aaagggaaacaagggcgtttccgtcagaaccttctcggtaaacgtgtagactactcagga
cgttccgttatcgtcgtaggtccgcacctgaaaatgtatcagtgcggattgccgaaggaa
atggcgcttgagctcttcaagccattcgttatgaaagagcttgttgaaaaaggtcttgct
cacaatatcaagagcgcaaaacgcaaaatcgaacgcgtgcagcctgaagtatgggatgta
cttgaatctgtcattaaggagcatccggtcttactgaaccgtgcccctacgcttcacaga
ttaggtatccaggctttcgaacctacgcttgttgaaggacgcgccatccgtcttcacccg
ttagtatgtacagcttataacgctgactttgacggtgaccaaatggcggttcacgtacct
ttatcagctgaggctcaagctgaggcgcgcattctgatgcttgcggctcaaaacatcttg
aaccctaaagatggtaaaccggttgttacgccgtctcaggatatggtattaggaaactac
tacctgacgcttgagcgcgccggagcagtcggcgaaggcatggtcttcaaaaatacggac
gaagcgcttcttgcttatcaaaacggatatgttcaccttcatacgagagtagccgttgcg
gcgaactccctgaagaatgtgacatttacggatgagcaacgttcaaaactgttaattaca
acagtcggtaagctggtcttcaatgaaattcttcctgagtcattcccttacatgaatgag
ccgtcgaagagcaacattgaagagaaaacacctgaccgtttcttcttagataaaggtgct
gacgtaaaagctgtgattgcagagcagccgatcaacgcaccgtttaaaaaaggtattctg
ggtaaaatcatcgcggaaatctttaaacgattccatatcacggaaacgtctaaaatgctt
gaccgcatgaaaaacctcggtttcagatattcaacgaaagccggcatcacagtaggggtt
tctgatatcgtcgttctcgatgataagcaggaaattcttgaagaagcacagagcaaagtt
gataatgtcatgaaacagttcagacgcggtttaatcactgaagaagaacgttatgaaaga
gttatttcaatttggagttcagcgaaggacgttatccaaggcaaactgatgaaatcatta
gacgaagtcaacccgatttacatgatgagtgattcaggagcccgtggtaacgcatctaac
tttacgcagcttgcgggtatgcggggtctgatggccaacccggctggacgaatcattgaa
ttgccgatcaaatcaagtttccgtgaaggtctgacagtattggagtactttatctccact
cacggtgcgcgtaaaggtcttgccgataccgccctgaaaacagctgactcaggttacctg
acacgccgtcttgttgatgttgcgcaggatgttatcattcgtgaaacagattgcggaact
gaccgcggtattcttgcaaaaccgcttaaagaaggtacggaaatcatcgagcgtctggaa
gagcgtctgatcggacgtttcgccagaaaacagatcaaacatcctgaaacgggtgctgtg
ctcattaacgaaaacgaattgatcgatgaagataaagcgctggaaatcgttgaagcagga
atcgaagaagtgtggatccgttctgcgtttacatgtaacactcctcatggtgtatgtaaa
cgatgctacggacgaaaccttgcaaccggaaccgacgttgaagtcggcgaagcagtaggc
attatcgccgcccaatctatcggtgagcctggaacacagttaacaatgcgtacgttccac
acaggcggggttgccggagacgatatcacacaaggtcttccgcgtatccaagagcttttc
gaagcgcgtaatccgaaaggtcaagcgacgatttctgaaattgacggtacaattgccgaa
atcaatgaagtccgcgacaaacagcaggaaattgttgttcagggcgctgttgagacacgt
tcatacacggcaccttacaactcacgcctgaaagtggctgagggtgatcagattacccgc
ggccaagtcctgacagaaggttctatcgatccgaaagaacttcttaaagtcactgacctg
acaacggttcaggaatatcttctgcatgaggttcagaaggtttaccgtatgcagggggtt
gaaatcggcgataaacacgtagaagtaatggttcgccagatgcttcgcaaagtccgtgtg
atcgatgccggagatactgatgttcttcctggcacattgcttgatattcaccaattcaca
gaagcgaacaaaaaagtgctgcttgaaggcaatcgacctgctacaggccatcctgtcctt
ctcggtatcacgaaagcttcacttgagacagattcattcttgtctgccgcatcattccaa
gaaacaacacgcgttcttacagatgctgcgattaaaggcaagcgtgatgaacttctcggc
ctgaaagagaatgttatcatcggtaaactggttccggccggtaccggtatgatgaattac
agaaaagtaaaacctgtttcaaacgttcagcctgcggaagatatggttccggctgaataa
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integrated database retrieval system