Bipolaris zeicola: COCCADRAFT_90040
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Entry
COCCADRAFT_90040 CDS
T03110
Name
(RefSeq) hypothetical protein
KO
K10884
ATP-dependent DNA helicase 2 subunit 1
Organism
bze
Bipolaris zeicola
Pathway
bze03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
bze00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
COCCADRAFT_90040
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
bze03041
]
COCCADRAFT_90040
03400 DNA repair and recombination proteins [BR:
bze03400
]
COCCADRAFT_90040
Spliceosome [BR:
bze03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
COCCADRAFT_90040
DNA repair and recombination proteins [BR:
bze03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA-PK complex
COCCADRAFT_90040
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ku
Ku_N
Ku_C
SAP
Motif
Other DBs
NCBI-GeneID:
19152897
NCBI-ProteinID:
XP_007709946
JGI:
90040
UniProt:
W6YDQ5
LinkDB
All DBs
Position
Unknown
AA seq
662 aa
AA seq
DB search
MTDPQDNRLGEEEDDEDEEEIDDTSYKTIKDAVLFAVHVSPGMLEKPPKSEDKKAERDSP
TSAALKCAYQLMQQRIISNPNDMMGILLFGTEETDLKDGDSTFQHCYLLADLDVPSAQDV
KRLRDMVEDEEEAEKILKPAKDGASIATVLFCANQIFTTKAPNFSSRRLFLVTDNDYPVK
AKVDKDAAVTRARDLYDLGCTIDLFPISQLDHSFDRSRFYDDLVYPTSPSDPDAPVSIPS
TTKVAKSGEGISLLKQLISSINSKATPRRALFSLPLELGPNLKIGVKGYILIKRQEHVKS
CYVWVGGEKPQIVTSSTTHMADDTARTVEKAELRKAYKFGGDVITFTPEEITKIRQCFGE
PVIRIIGFKPLSSVPIWANTNKSTFIYPSEADYIGSTRVFSALQRKLLKSKKMGLVWFIP
RRNAAPILAALIPAEEKTNEEGEQVMPPGLWLVPLPFADDIRQFPTPPEEPLKTTDALTD
KMRLIIEQLQLPKGIYDPSRYPNPDLQWFYRILQALALEEELPEHPDDKTIPRFKQIDKR
CGEYIEDYGKEFQEVYAQQQKSALAHRTKPTAKKRPGGADAEVEEKKPAAKRVKKEPKGA
DGGDEDGGMTDQQMADINNSGQISKQTVAVLKQWLSARSQSITGKKADLLERVQEYLDGK
GL
NT seq
1989 nt
NT seq
+upstream
nt +downstream
nt
atgacggaccctcaggacaaccgactaggtgaagaggaagatgacgaggacgaagaggaa
attgacgatactagttacaaaactattaaagatgctgttctcttcgccgtccatgtcagt
cccggtatgcttgaaaagccgcccaagtcagaagacaagaaagccgaacgcgactcacca
acctctgccgctctaaaatgtgcctaccaattaatgcagcagcgcatcatctcaaatcca
aacgatatgatgggcatactgctgtttggcacagaggaaacagacttgaaagacggtgac
agtacatttcagcactgctatctattggccgacctagatgttccatcagcgcaagacgtt
aaaagactgagagacatggtcgaggacgaggaagaagccgaaaagattctcaagccggca
aaggatggagccagcatagcaacagtgcttttttgcgcaaatcagatcttcaccaccaaa
gcaccaaacttctcgtcaagacgtctgttcctagtcaccgacaacgattatccggtcaaa
gccaaagtagacaaagatgctgcagtcacacgagcccgcgatctatacgacttgggctgc
accattgatctattccccatttcacaactagatcacagctttgacagatcacgcttttac
gatgatcttgtttatccaacatcaccatcagacccagatgcaccagtttctataccttct
accacgaaagttgcgaagagcggtgaaggcatttctctactgaaacaactcatctcttca
atcaactcgaaagccacacctcgccgtgctctattctcgttgccgctggaattaggcccc
aacttgaaaattggtgtaaagggatacatcttgatcaaacgccaggagcatgtcaagtca
tgctatgtatgggttggtggagagaaaccacaaatagtcacgtcttcaactacacatatg
gccgacgacactgcgcggactgtcgagaaggctgagctacggaaagcgtacaagttcggc
ggtgacgtgataacgttcacacctgaagaaatcacgaagatacggcaatgtttcggcgaa
cctgtcatacgtataattggcttcaagcctctttccagcgtacccatctgggcgaacacg
aacaagtcaacattcatttacccatcagaggcagactatatcggctcaacgcgtgtcttc
tcggcattacagcggaagctactaaagtccaagaagatgggtttagtatggtttattcca
cgccgtaacgctgcacctatcctagcagcactcattccagccgaagagaaaaccaacgag
gaaggcgagcaagtcatgccacctgggctctggctcgtacctcttcccttcgccgatgac
attcgccaattccctacacctcccgaagagcctctcaagactaccgatgccctaacagac
aagatgcgcctcatcatcgagcaactccaactaccaaaaggcatatacgatccttccaga
tatcccaatcctgatttacaatggttctaccgcattcttcaagccctcgcgttggaagag
gagctgccagagcatccagacgacaagaccataccgcgcttcaagcaaatcgacaagcgc
tgcggggaatatatagaagactacggcaaggagttccaggaagtatacgctcagcaacaa
aaatcagctcttgcacaccgtaccaaacccactgctaagaaacgccctggtggagccgat
gccgaagttgaagaaaagaaacctgcggctaagcgtgtgaagaaggagcctaagggggcg
gatggtggtgatgaagatggtggtatgacagatcagcagatggcagatatcaataacagc
gggcaaattagcaaacagactgttgctgtgttaaagcagtggctgagtgctaggagccag
agtatcacggggaagaaggcggatttgttggaacgggtgcaggagtatcttgatgggaag
gggctttga
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integrated database retrieval system