Catenulispora acidiphila: Caci_1202
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Entry
Caci_1202 CDS
T00967
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
cai
Catenulispora acidiphila
Pathway
cai03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cai00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Caci_1202
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cai03021
]
Caci_1202
03019 Messenger RNA biogenesis [BR:
cai03019
]
Caci_1202
Transcription machinery [BR:
cai03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
Caci_1202
Messenger RNA biogenesis [BR:
cai03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
Caci_1202
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATP-synt_ab
Rho_RNA_bind
Rho_N
AAA_25
NACHT
AAA
AAA_22
Spore_III_AA
CoV_NSP2_C
ResIII
Motif
Other DBs
NCBI-ProteinID:
ACU70127
UniProt:
C7Q630
LinkDB
All DBs
Position
1357293..1359299
Genome browser
AA seq
668 aa
AA seq
DB search
MSDTTTESPATAPAGRAGKGLSSMLLPELQAYAVSLGITGTARMRKGQLVEAIQEKNNGG
AKAEPAAAAAPARTTARRTRASNTAAAAEKAAAEQTSEVRADIPVQPQRERVEKAAAEPA
ARAERTERAERAERAERGADRAERTERAAKAAEGAVATAEGQAPAAAATATATAEGGQAG
QSAQGGQGEGDQQRNRRERTNSNNNRRDRDRGRGGEGGGDRQQNSGGGQNQNQNQNQSQN
SGGGGDDFDDRRGGNRRTRDRNRNREDRQNRRNNRNRGEGGSEVDTTISDDDVLIPVGGI
VDILDNYAFVRTSGYLPGPDDVYVSLAMVRKNNLRKGDAVTGVIRAPQEGERREKFNALV
RLDSVNGLEPSSSRQRPEFNKLTPLYPQDRLRLETEPHILTTRIIDMIAPIGKGQRGLIV
APPKTGKTMIMQAVANAITQNNPECHLMVVLVDERPEEVTDMQRSVKGEVIASTFDRPAE
DHTTVAELAIERAKRLVELGHDVVVLLDSITRLGRAYNTSAPASGRILTGGMDSQAMYPP
KKFFGAARNIENGGSLTILATALVETGSRLDEVIFEEFKGTGNMELRLDRKLADKRIFPA
VDVDPSSTRKEELLLGAEELSIVWKLRRVLHALDQQQAMELLLDRMKKTKSNAEFLMTIQ
KTAVGPQD
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
gtgagcgacaccacgactgaatcccccgccaccgcccccgccgggcgtgccggcaagggg
ctgtcctcgatgctgctccccgagctccaggcctacgccgtgagcctggggatcaccggt
accgcgcggatgcgcaagggccagctcgtcgaggcaattcaggagaagaacaacggcggg
gccaaggccgagcccgccgccgcggcggcgcccgcgcggaccaccgcgcgccgtacccgg
gccagcaacaccgccgccgcggccgagaaggccgccgcggagcagacctctgaggtccgc
gccgacatccccgtgcagccgcagcgcgagcgggtcgagaaggccgccgccgagccggcc
gcgcgcgccgagcgcacggagcgtgccgagcgggccgagcgggccgagcgcggcgccgac
cgggccgagcgcaccgagcgggccgccaaggccgccgagggcgcggtggccaccgccgag
ggccaggcgcccgccgccgcggctaccgcgaccgccacggccgagggcggccaggccggc
cagtccgcgcagggcggccagggcgagggcgaccagcagcgcaaccgccgcgagcgcacc
aacagcaacaacaaccgccgggaccgcgaccgcggacgcggcggcgagggcggcggcgac
cgccagcagaactccggcggcggccagaaccagaatcagaatcagaaccagagccagaac
tccggcggaggcggcgatgacttcgacgaccgccgcggcggcaaccggcgcacccgggac
cgcaaccgcaaccgcgaggaccggcagaaccgccgcaacaaccgcaaccgcggcgagggc
ggctcggaggtcgacaccacgatcagcgacgacgacgtcctgatcccggtcggcggcatc
gtcgacatcctggacaactacgccttcgtgcggacctccggttacctgcccggcccggac
gacgtctacgtctccctggccatggtccgcaagaacaacctgcgcaagggcgacgccgtc
accggcgtcatccgtgccccgcaggagggcgagcgccgcgagaagttcaacgccctggtg
cgcctggactcggtcaacggcctggagccgagttcctcgcgccagcgtcctgagttcaac
aagctcaccccgctgtacccgcaggaccggctccgcctggagaccgagccccacatcctg
accacgcgcatcatcgacatgatcgcgccgatcgggaagggccagcgcggtctgatcgtg
gcgccgccgaagaccggcaagaccatgatcatgcaggcggtcgccaacgcgatcacccag
aacaaccccgagtgccacctgatggtggtgctggtcgacgagcggcccgaagaggtcacc
gacatgcagcgctcggtgaagggcgaggtcatcgcctcgaccttcgaccggcccgccgag
gaccacaccacggtcgccgaactggccatcgagcgcgccaagcgcctggtggagctcggc
cacgacgtggtggtcctgctggactcgatcacccgcctgggccgcgcctacaacaccagc
gccccggcctccggccgcatcctcaccggcggtatggacagccaggcgatgtacccgccg
aagaagttcttcggcgcggcgcgcaacatcgagaacggcggctcgctgaccatcctggcg
accgcgctggtggagaccggctcccgcctcgacgaggtgatcttcgaggagttcaagggc
accggcaacatggagctgcggctggaccgcaagctcgccgacaagcgcatcttcccggcg
gtcgacgtcgacccctcgagcacgcgcaaggaggagctgctcctcggcgccgaggagctc
agcatcgtctggaagctccgccgcgtcctgcacgcgctggaccagcagcaggcgatggag
ctcctgctggaccggatgaagaagaccaagtccaacgccgagttcctgatgaccatccag
aagacggcggtcggtccgcaggactag
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