Caldilinea aerophila: CLDAP_20120
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Entry
CLDAP_20120 CDS
T01797
Name
(GenBank) putative ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
cap
Caldilinea aerophila
Pathway
cap03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cap00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CLDAP_20120
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cap03019
]
CLDAP_20120
03400 DNA repair and recombination proteins [BR:
cap03400
]
CLDAP_20120
Enzymes [BR:
cap01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CLDAP_20120
Messenger RNA biogenesis [BR:
cap03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CLDAP_20120
DNA repair and recombination proteins [BR:
cap03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
CLDAP_20120
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HRDC
DEAD
Helicase_C
RecQ_Zn_bind
ResIII
HHH
Coatomer_E
ANAPC3
TPR_16
TPR_19
RQC
TPR_14
AAA_22
Motif
Other DBs
NCBI-ProteinID:
BAM00052
UniProt:
I0I464
LinkDB
All DBs
Position
complement(2528662..2532228)
Genome browser
AA seq
1188 aa
AA seq
DB search
MADPEIRITAHYSLASETLVRLPSELCDRLLVYLQRWGEPSEQIKAAEQLLSVNGVRLPL
LDYLARAYLAAGQAEKALTLIEQRQRRNTTFTSQALEATALLRIGRRDAARHVAQELART
HPTNPIAILSAAKTLLESDDGELALTLVETYRQHKPYDLAALLMTAHIALALGRRDLAEA
QLQRLGSGVSVGMEVEQLIQLEQLATQMGKLETANATRLELQRRHQQDLAALQQLLSPFV
EGADLLTKNPHAFYEHYTGLDAVQLTPEERRHIQLEAIRHFGFEQLRKGQAETIALALLR
KQSVLMVMPTGGGKSLCYQLPALLSPHATLVISPLIALMKDQVEGLPRAARPLAVFINST
LSDAEAAERMEGIVQGKYKLIYAAPERLRQRAFLHALRRAGVDLFVVDEAHCVSMWGHDF
RPDYLFIRKARRELGAPRALAMTATAPPRIRDEIIEMLMDTEEDPQGDAPPPRPYVIALD
IFRPNLHLSALQFQNEEEKLSALVNYVCNTEGSGIVYVNTRSRAEAIAAALQRAGVRAEA
YHAGLAAREPVQDRFMRNQTRVVVATIAFGMGIDKPDIRFIVHFHPSRSLEAYYQEVGRA
GRDGQLSQGILFYSNNDWANLRRWARAEQYTVDFLRRVYAAIAAQLDGQTSTAPAEAAER
NSDEAPASDQRTLSGFVDLRRLQQVLDSDETTLRVAVSMLERADLLRRGFDLPREVTISV
PKRFNRLALEERALARLFKGLQLGPEQSATFALSDIARFMGWRLEEAEARLLEWQDRGVF
TLRFARRAMFIELPPEPEDLNQRLDRLLAQSEAVAMRRIDDMIGYATTEACRHGYISAYF
GSPPRTRCSVCDNCTGIRPAIELPERVEHLTPDDVDIEPMIIDCLMSLPRPVGRSGLARI
LAGSLRAPFKPDQARHYGALKALGEAAALAYIDDLIEQNRLRQYNRQDYPVLAPTLRGRI
EAEAWLAEHPELANYGEASPTPEEPAQAPGEDAVHYTALQKALWLWRRRVAEQLGQPPYV
VMRNELILQIAETRPQTLEELAALPGMGAQRLQHYGETILDLVKLNPPQPGDEEKLAAQR
QARQNITVSSLNASEKPSGDAAAQMQKQIYTRLQELRQKLAVKARVRPYQIAGDPLLKTI
AQQAPATLEELNAIPGFRTSGLAQEAVQILTMIEAIRMNLQSKGGFTA
NT seq
3567 nt
NT seq
+upstream
nt +downstream
nt
atggctgatcctgagattcgaatcaccgctcactattctcttgcctccgaaactctcgtc
cgtctgccgtcggaattgtgcgatcgactgctcgtctaccttcaacgctggggagagccc
tcagagcaaatcaaagccgccgaacaactgctttcggtgaacggtgttcgcctgcccctg
cttgactatcttgcccgggcgtatcttgcagcagggcaagcggaaaaggcgctcactttg
atcgagcaacgtcaacgccgcaacaccaccttcacctcccaggctttggaggcgacagcg
ttgctcaggataggacgccgcgacgccgcccgccacgttgctcaagagctggccaggacg
catccgaccaaccctatcgccatcctgtcagcggcaaaaactttgctcgaaagcgacgac
ggggagcttgcactgaccctggtcgagacctatcgtcagcacaaaccttacgacctggct
gcgctgttgatgacggcccacattgcgctggcgctcgggcgacgtgatctggccgaggca
cagcttcagcgcctgggcagcggcgtttcggtgggcatggaggtcgaacaacttatccaa
ctggagcaactggccacccaaatggggaagctggaaacagccaacgccacccggctcgag
ctgcaacgccggcatcaacaggatctggctgccctgcaacagctcctgtctccttttgtc
gaaggcgccgatctgctgacaaaaaacccccatgccttctatgagcactacaccggcctc
gatgccgtgcaattaacccctgaagagcgcagacacattcagcttgaggcgattcgccat
tttggcttcgagcagttgcgcaaaggtcaggcggagacgatcgccctggcgttgctgcgc
aaacagtccgtcttgatggtgatgccgaccggcggcggaaagtcgctctgctatcagctt
ccggccctgctcagccctcacgccacgctcgtgatcagccccctcatcgccttgatgaaa
gatcaggtggaagggctgccgcgtgcggcgcgtccgctcgccgtcttcatcaacagcacc
ttgagcgatgcagaggcggcggagcgcatggaaggcatcgtgcagggcaaatacaagctc
atctatgcagcgccggaacgcctgcgccagcgcgcttttttacatgcgctgcgccgtgca
ggcgtcgatctcttcgtggtggacgaggcgcactgtgtcagcatgtgggggcatgatttt
cgcccggactatctgttcatccgcaaggcgcggcgagaattaggcgccccgcgtgcgctg
gcaatgactgccacggcgcccccgcgcatccgcgatgagatcattgaaatgttgatggac
acggaagaggatccacaaggcgatgcccctccaccccgcccctacgtcattgcgctggac
atctttcgaccgaatctccatctttccgctttacaatttcaaaatgaagaggaaaagctg
tcagcgttggtgaactacgtgtgcaacacggagggcagcgggatcgtctacgtcaacacc
cgcagccgtgcggaagcgatcgcagccgccttgcagcgcgccggggtgcgcgccgaagcc
tatcacgccggcctggcggcacgcgagccggtgcaggatcgcttcatgcgcaatcagaca
cgcgtcgtcgttgccaccatcgccttcggcatgggcatcgacaagcccgatattcgcttt
atcgtgcactttcatccctcgcgcagcctggaagcctactatcaggaggtaggccgggcc
ggccgcgacggccagctcagccagggcattcttttttacagcaacaacgactgggcgaac
ctgcgccgctgggcacgtgccgaacagtacacggtcgactttctccggcgcgtctatgcc
gccatcgctgcgcagctcgatgggcaaacaagcactgctcccgcagaggcagcagagcgc
aacagcgacgaggcgccggcgtcggaccaacgaacgctctccggcttcgtcgatttacgg
cgccttcagcaggtgctcgacagcgatgaaaccacgctgcgcgtggcggtcagcatgttg
gagcgcgcggatctgctgcgccgcggctttgacctgcctcgcgaggtcacaatcagcgta
cccaaacgcttcaaccgccttgcactggaggagcgtgccctggcgcgtcttttcaaaggg
ttgcagctcggccctgaacaatcggccaccttcgccctgtccgacattgcgcgatttatg
ggctggcggctcgaagaggctgaagcccgcctgctcgagtggcaggatcgcggggtgttt
acgctgcgcttcgcacgccgggccatgttcattgagctgccgccagagccagaggacctg
aaccagcggctggatcgcctccttgcacagtccgaagctgtggcgatgcgacgtatcgac
gacatgatcggctatgccacgacggaggcatgtcgccatgggtacatcagcgcttatttc
ggtagcccacctcgcacgcgctgcagcgtctgtgacaactgcaccggcatccgcccggcc
atcgaactgccggagcgcgtcgaacatctgacgccggacgacgtggacatcgagccgatg
atcatcgactgcctgatgagcctgcccagaccggtcgggcgcagcggtctggcgcgcatc
ctggctggatcgctgcgggcgccgtttaagccggatcaggcgcgccattatggtgcactc
aaggcgttgggggaggcggctgcgctggcgtacatcgacgacctgatcgaacagaatcgc
ctgcgtcagtacaatcgacaggactacccggtgttggcgccgacgctgcgcggccgcatc
gaggcagaggcgtggctggccgaacatcctgagctggccaactacggcgaggcttctccc
acgcctgaagaacctgcacaggctccaggggaggatgccgtccactatacagcgctgcaa
aaagcgctctggctgtggcggcgacgcgtggccgaacagttggggcagccaccctatgtg
gtgatgcgcaacgagctgatcctgcagatcgccgagacgcgaccacaaacgcttgaggag
ctggcagcgctgcccggcatgggcgcacagcggctacaacattatggagaaacgattctc
gacctcgtcaaactcaacccaccccagccgggagacgaagagaaacttgcagcacagcgg
caggcccgtcaaaacatcaccgtgagctccctcaatgcatctgaaaagccttcaggcgat
gcggcagcgcagatgcaaaaacagatttacacacggctccaggaactgcgtcagaagctc
gccgtgaaagcacgcgtcagaccgtaccagatcgccggtgatccgctgctcaaaaccatt
gcgcaacaggcccctgcaacgctggaagaactcaatgcaattcctggctttcgcaccagt
ggattggctcaggaagctgttcaaattttgacgatgatcgaggcaatccgcatgaacctg
caatccaaaggtggctttacagcctga
DBGET
integrated database retrieval system
