Collimonas arenae: LT85_0715
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Entry
LT85_0715 CDS
T03512
Name
(GenBank) RNA polymerase sigma factor
KO
K03088
RNA polymerase sigma-70 factor, ECF subfamily
Organism
care
Collimonas arenae
Brite
KEGG Orthology (KO) [BR:
care00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
care03021
]
LT85_0715
Transcription machinery [BR:
care03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
LT85_0715
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4_2
Sigma70_r4
HTH_23
LssY_C
MerR_1
Motif
Other DBs
NCBI-ProteinID:
AIY39875
UniProt:
A0A0A1F7W0
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All DBs
Position
complement(796224..796808)
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AA seq
194 aa
AA seq
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MPSKDLQPEQLKIWLAAVTRKDAIAFRALYDATSWKLFGFALRILVKREWAEEILQESFV
NIWNNADSYQASLAAPMTWMTTIVRNKAFDLLRRTDGAVEIDADTFDKEVMNAMESADPT
PLEALQLTDDAKALAKCLGRLEGAHRQAIALSFYHDLSHSEVAEQMKLPIGTIKTWIRRG
LERLKTCLGKLGSV
NT seq
585 nt
NT seq
+upstream
nt +downstream
nt
ttgccatccaaagacttgcaaccggaacaactgaaaatctggcttgctgcagtcacgcgc
aaggacgctatcgcttttcgcgcactctatgacgcaacctcctggaaactgtttggcttc
gcgctacgtatactagttaagcgcgagtgggcggaagagattctgcaggaaagtttcgtc
aacatctggaacaacgccgatagctaccaggctagcctggcggcaccgatgacctggatg
accaccatcgtgcgcaacaaggcattcgatctcctgcgccgcacggatggcgccgtcgag
atcgatgccgacacatttgacaaggaagtcatgaacgcaatggaaagcgccgacccgaca
ccgttggaagcgctgcaactcactgatgatgcgaaggcgctggccaaatgcctgggacgc
cttgagggcgcgcatcgccaagccattgccctgtctttttatcatgacctgtcgcatagc
gaagtggcagaacaaatgaaattgccgattggcaccatcaagacatggatacggcgcggg
cttgagcgcctcaaaacatgtctcggcaaacttgggagcgtctga
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