KEGG   Croceibacter atlanticus: CA2559_00025
Entry
CA2559_00025      CDS       T01256                                 
Name
(GenBank) DNA-directed RNA polymerase beta subunit
  KO
K03043  DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
Organism
cat  Croceibacter atlanticus
Pathway
cat03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:cat00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    CA2559_00025
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:cat03021]
    CA2559_00025
   03400 DNA repair and recombination proteins [BR:cat03400]
    CA2559_00025
Enzymes [BR:cat01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     CA2559_00025
Transcription machinery [BR:cat03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     CA2559_00025
DNA repair and recombination proteins [BR:cat03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      CA2559_00025
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_2 RNA_pol_Rpb2_3 RNA_pol_Rpb2_7 RNA_pol_Rpb2_45 RNA_pol_Rpb2_1 Tudor_1_RapA Biotin_lipoyl RnfC_N
Other DBs
NCBI-ProteinID: EAP87094
UniProt: A3U4C7
LinkDB
Position
complement(32692..36504)
AA seq 1270 aa
MLATQTERLNFSNVKNRPDYPDFLDIQIQSFQDFFQLETKSDEREAEGLYKTFMENFPIT
DTRNQFVLEFLDYFVDPPRYSIQECIERGLTYSVPLKARLKLYCTDPEHEDFETIVQDVY
LGTIPYMTPSGTFCINGAERVVVSQLHRSPGVFFGQSFHANGTKLYSARVIPFKGSWIEF
ATDINSVMYAYIDRKKKLPVTTLFRAIGFERDKDILEIFDLAEEVKVTKSGLKKVLGRKL
AARVLNTWYEDFVDEDTGEVVSIERNEIVLDRDTELEKEHIEEILETGTKTILLHKEDNS
TGDYAIIHNTLQKDPTNSEKEAVEHIYRQLRNAEPPDEETARGIIDKLFFSDQRYNLGEV
GRYRMNKKLGLDIAMDKQVLTKEDIITIIKYLIELINSKAEIDDIDHLSNRRVRTVGEQL
SQQFGVGLARMARTIRERMNVRDNEVFTPIDLINAKTLSSVINSFFGTNQLSQFMDQTNP
LAEITHKRRLSALGPGGLSRERAGFEVRDVHYTHYGRLCPIETPEGPNIGLISSLSVYAK
VNALGFIETPYRKVDDGKINLDESPIYLSAEEEEGMKIAQANIPLDDKGNIEAERVIARL
EGDFPVEDPKNVNYIDVAPNQISSISASLIPFLEHDDANRALMGSNMMRQAVPLLRVDSP
IVGTGLERQVASDSRVLINAEGAGTVEYVDANMVTIKYDRSEEERQVSFDSDSKSYNLIK
FRKTNQGTSINLKPIVKVGDRVERGQVLCQGYATEAGELALGRNMKVAFMPWKGYNFEDA
IVISEKVVREDIFTSIHVDEYSLDVRDTKLGNEELTNDIPNVSEEATKDLDEYGMIRIGA
EVKPGDILIGKITPKGESDPTPEEKLLRAIFGDKAGDVKDASLKASPSLNGVVIDKKLFE
RAIKDKRKRAQDKEDIARLEVEYDAKFDDLKAVLVEKLFNLIGGKTAQGVKNDLGEDILP
KGKKYTLKMLNSVEDYTHLTQGTWTTDDELNSMVADLIHNYKIKENDLQGNLRREKFTIS
VGDELPAGIIKLAKIYIAKKRKLKVGDKMAGRHGNKGIVARIVREEDMPFLEDGTPVDIV
LNPLGVPSRMNIGQIYETVLGWAGQKLGRKFATPIFDGATLDQINELTDEAGIPRFGHTH
LYDGGTGDRFDQPATVGVIYMLKLGHMVDDKMHARSIGPYSLITQQPLGGKAQFGGQRFG
EMEVWALEAYGASSTLREILTVKSDDVIGRAKTYESIVKGEPMPEPGLRESFNVLMHELK
GLGLDIRLEE
NT seq 3813 nt   +upstreamnt  +downstreamnt
atgttagcaacgcagactgaaagattgaatttctcaaatgtgaagaatagacctgattat
ccagatttcttggatattcaaatacagtctttccaagacttcttccaattggaaacaaaa
tctgatgagcgggaagcagaaggtctttacaagacctttatggaaaacttccctattacg
gatacccgtaatcaatttgtattagagtttttagattatttcgtggacccgccaagatat
tctattcaagaatgtattgaacgcggtttaacatacagtgtaccacttaaggcaagactt
aagttgtattgtacagatccagaacacgaagattttgaaaccatcgtacaggacgtgtac
cttggtactattccttatatgacaccaagtggtactttttgtatcaatggtgcagaacgt
gttgttgtttctcaattacaccgttctcctggtgtattctttggacaatctttccacgcc
aatggaactaaattatactctgcaagagtaattccttttaaaggatcttggatagagttt
gctacagatataaacagcgtaatgtatgcttatatcgatagaaagaaaaaattacctgta
acaacacttttccgtgcaataggtttcgaaagagataaagatattcttgaaatatttgac
ctagctgaagaagtaaaagttactaaatctggtcttaaaaaagtacttggccgtaaattg
gctgcacgtgttttaaatacgtggtatgaagatttcgtagatgaagatactggtgaagtt
gtttcaattgaaagaaacgaaattgtattagaccgtgatacagaattagaaaaagagcac
atagaagaaattcttgagactggtactaaaactattcttttacataaagaagacaatagt
actggtgattatgcaattattcataatacactacaaaaagatccaacaaactctgaaaaa
gaagctgttgagcatatctatcgtcaattacgtaatgcagagccgccagatgaggaaact
gcacgtggtattatagataagctattctttagtgaccaacgctacaacttaggtgaggta
ggtcgttatagaatgaacaaaaaacttggtttagatatcgctatggataagcaagtgctt
accaaagaggatattattacaatcataaaatatttaattgagttaattaactcaaaagct
gagattgatgatattgatcacttatctaaccgtcgtgtacgtacagtaggtgagcaatta
tcacaacaatttggtgttggtcttgcacgtatggctcgtactattcgtgagcgtatgaac
gttcgtgataacgaggtctttactcctatagatttgattaatgcaaagactttatcgtct
gtaattaattctttctttggtacaaaccaactttctcaatttatggatcaaaccaatcca
ctagcagagataacgcacaagcgtcgtctttcagctcttggacctggtggtctttctcgt
gagcgtgcaggtttcgaagttcgagatgtacactacacacactatggaagactttgtcct
attgaaacaccagaaggacctaacattggtcttatttcttctttgtctgtatatgctaaa
gtaaatgctttaggatttattgaaacgccatacagaaaagtagatgatggtaaaattaat
ttagatgaatcaccaatttacctttctgcagaagaagaggaaggaatgaaaattgcacaa
gcaaacattccattagacgataaaggtaatattgaggcagaacgtgtaattgctcgtctt
gaaggagatttcccagtggaagatcctaagaacgtaaattatatagatgttgctccaaac
cagatatcatctatttctgcatctcttattccgttcctagaacatgatgatgcaaaccgt
gccttgatgggatctaacatgatgcgtcaagcagtaccattattaagagtagattctcca
attgtaggtacaggtcttgagcgtcaggtagcatcagattctagagtgcttattaatgca
gaaggtgcaggtactgtagagtatgttgatgctaatatggtaactattaagtatgataga
tcagaagaagaacgtcaagttagttttgatagtgattcaaaatcttacaacttaattaaa
ttccgtaaaactaaccaaggtacatctatcaaccttaagccaattgtaaaagttggtgac
cgtgttgaaagaggacaagtactttgtcaaggatatgcaacagaagctggagaacttgct
ttaggtagaaatatgaaagtagcctttatgccttggaaagggtataactttgaggatgca
attgtaatttcagaaaaagtagtacgtgaagatatatttacatctattcacgtagatgaa
tattctttagatgttagagatacaaaattaggtaatgaagaattaactaatgacatacca
aacgtttcagaagaggctactaaagaccttgatgaatatggtatgattcgtattggtgca
gaggttaagcctggagatatattaattggaaaaattactccaaaaggagaaagtgatcca
actccagaagaaaaattacttcgcgcaatatttggtgataaagcaggagatgtaaaagat
gcatctttaaaagcatcgccatctcttaacggtgttgtaatagataagaaattgtttgaa
agagcaattaaagataagcgtaagagagcacaagataaagaagatatagcaagacttgaa
gttgagtatgacgctaaatttgatgaccttaaagctgttttagttgaaaagttatttaac
ctaataggtggaaaaacagcacaaggtgttaagaatgatttaggggaagacattttacca
aaaggtaagaagtatactttaaaaatgcttaactctgttgaagattatactcaccttact
caaggtacgtggactacagatgatgagttaaatagtatggttgcagacttaatccataat
tataagattaaggaaaacgacttacaaggtaacttaagacgtgagaaatttactatttct
gtaggagatgagttgccagcaggtattatcaagttagcaaaaatttatattgctaaaaag
cgtaagcttaaggttggtgataaaatggcaggtcgtcacggtaacaaaggtattgtagca
cgtattgtacgtgaagaagatatgcctttcttagaagacggaacgccagtagatatcgta
cttaacccacttggtgtaccatctcgtatgaacatcgggcaaatttacgaaacagttctt
ggttgggcaggacaaaaattaggacgcaagtttgctactccaatttttgacggtgcaact
ttagaccaaataaatgaattaacagacgaagcaggtattcctcgttttggccatacacat
ttatatgatggtggtacaggagaccgttttgatcaaccagcaacagtaggtgttatctat
atgttgaagttaggtcacatggtagatgataagatgcacgctcgttctataggtccttac
tcattaattacacaacaaccattaggtggtaaagcacaatttggtggtcagcgttttggt
gagatggaggtttgggctcttgaagcatatggtgcatctagcactcttcgtgagatcctt
acagtaaaatctgatgatgttattggtagagcaaaaacttacgaaagtatagtaaaaggt
gagccaatgccagaaccaggattgcgagaatcttttaacgtgttaatgcacgaattaaaa
ggattaggacttgatattcgactcgaagaataa

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