Croceibacter atlanticus: CA2559_00025
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Entry
CA2559_00025 CDS
T01256
Name
(GenBank) DNA-directed RNA polymerase beta subunit
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
cat
Croceibacter atlanticus
Pathway
cat03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cat00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CA2559_00025
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cat03021
]
CA2559_00025
03400 DNA repair and recombination proteins [BR:
cat03400
]
CA2559_00025
Enzymes [BR:
cat01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CA2559_00025
Transcription machinery [BR:
cat03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CA2559_00025
DNA repair and recombination proteins [BR:
cat03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CA2559_00025
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Tudor_1_RapA
Biotin_lipoyl
RnfC_N
Motif
Other DBs
NCBI-ProteinID:
EAP87094
UniProt:
A3U4C7
LinkDB
All DBs
Position
complement(32692..36504)
Genome browser
AA seq
1270 aa
AA seq
DB search
MLATQTERLNFSNVKNRPDYPDFLDIQIQSFQDFFQLETKSDEREAEGLYKTFMENFPIT
DTRNQFVLEFLDYFVDPPRYSIQECIERGLTYSVPLKARLKLYCTDPEHEDFETIVQDVY
LGTIPYMTPSGTFCINGAERVVVSQLHRSPGVFFGQSFHANGTKLYSARVIPFKGSWIEF
ATDINSVMYAYIDRKKKLPVTTLFRAIGFERDKDILEIFDLAEEVKVTKSGLKKVLGRKL
AARVLNTWYEDFVDEDTGEVVSIERNEIVLDRDTELEKEHIEEILETGTKTILLHKEDNS
TGDYAIIHNTLQKDPTNSEKEAVEHIYRQLRNAEPPDEETARGIIDKLFFSDQRYNLGEV
GRYRMNKKLGLDIAMDKQVLTKEDIITIIKYLIELINSKAEIDDIDHLSNRRVRTVGEQL
SQQFGVGLARMARTIRERMNVRDNEVFTPIDLINAKTLSSVINSFFGTNQLSQFMDQTNP
LAEITHKRRLSALGPGGLSRERAGFEVRDVHYTHYGRLCPIETPEGPNIGLISSLSVYAK
VNALGFIETPYRKVDDGKINLDESPIYLSAEEEEGMKIAQANIPLDDKGNIEAERVIARL
EGDFPVEDPKNVNYIDVAPNQISSISASLIPFLEHDDANRALMGSNMMRQAVPLLRVDSP
IVGTGLERQVASDSRVLINAEGAGTVEYVDANMVTIKYDRSEEERQVSFDSDSKSYNLIK
FRKTNQGTSINLKPIVKVGDRVERGQVLCQGYATEAGELALGRNMKVAFMPWKGYNFEDA
IVISEKVVREDIFTSIHVDEYSLDVRDTKLGNEELTNDIPNVSEEATKDLDEYGMIRIGA
EVKPGDILIGKITPKGESDPTPEEKLLRAIFGDKAGDVKDASLKASPSLNGVVIDKKLFE
RAIKDKRKRAQDKEDIARLEVEYDAKFDDLKAVLVEKLFNLIGGKTAQGVKNDLGEDILP
KGKKYTLKMLNSVEDYTHLTQGTWTTDDELNSMVADLIHNYKIKENDLQGNLRREKFTIS
VGDELPAGIIKLAKIYIAKKRKLKVGDKMAGRHGNKGIVARIVREEDMPFLEDGTPVDIV
LNPLGVPSRMNIGQIYETVLGWAGQKLGRKFATPIFDGATLDQINELTDEAGIPRFGHTH
LYDGGTGDRFDQPATVGVIYMLKLGHMVDDKMHARSIGPYSLITQQPLGGKAQFGGQRFG
EMEVWALEAYGASSTLREILTVKSDDVIGRAKTYESIVKGEPMPEPGLRESFNVLMHELK
GLGLDIRLEE
NT seq
3813 nt
NT seq
+upstream
nt +downstream
nt
atgttagcaacgcagactgaaagattgaatttctcaaatgtgaagaatagacctgattat
ccagatttcttggatattcaaatacagtctttccaagacttcttccaattggaaacaaaa
tctgatgagcgggaagcagaaggtctttacaagacctttatggaaaacttccctattacg
gatacccgtaatcaatttgtattagagtttttagattatttcgtggacccgccaagatat
tctattcaagaatgtattgaacgcggtttaacatacagtgtaccacttaaggcaagactt
aagttgtattgtacagatccagaacacgaagattttgaaaccatcgtacaggacgtgtac
cttggtactattccttatatgacaccaagtggtactttttgtatcaatggtgcagaacgt
gttgttgtttctcaattacaccgttctcctggtgtattctttggacaatctttccacgcc
aatggaactaaattatactctgcaagagtaattccttttaaaggatcttggatagagttt
gctacagatataaacagcgtaatgtatgcttatatcgatagaaagaaaaaattacctgta
acaacacttttccgtgcaataggtttcgaaagagataaagatattcttgaaatatttgac
ctagctgaagaagtaaaagttactaaatctggtcttaaaaaagtacttggccgtaaattg
gctgcacgtgttttaaatacgtggtatgaagatttcgtagatgaagatactggtgaagtt
gtttcaattgaaagaaacgaaattgtattagaccgtgatacagaattagaaaaagagcac
atagaagaaattcttgagactggtactaaaactattcttttacataaagaagacaatagt
actggtgattatgcaattattcataatacactacaaaaagatccaacaaactctgaaaaa
gaagctgttgagcatatctatcgtcaattacgtaatgcagagccgccagatgaggaaact
gcacgtggtattatagataagctattctttagtgaccaacgctacaacttaggtgaggta
ggtcgttatagaatgaacaaaaaacttggtttagatatcgctatggataagcaagtgctt
accaaagaggatattattacaatcataaaatatttaattgagttaattaactcaaaagct
gagattgatgatattgatcacttatctaaccgtcgtgtacgtacagtaggtgagcaatta
tcacaacaatttggtgttggtcttgcacgtatggctcgtactattcgtgagcgtatgaac
gttcgtgataacgaggtctttactcctatagatttgattaatgcaaagactttatcgtct
gtaattaattctttctttggtacaaaccaactttctcaatttatggatcaaaccaatcca
ctagcagagataacgcacaagcgtcgtctttcagctcttggacctggtggtctttctcgt
gagcgtgcaggtttcgaagttcgagatgtacactacacacactatggaagactttgtcct
attgaaacaccagaaggacctaacattggtcttatttcttctttgtctgtatatgctaaa
gtaaatgctttaggatttattgaaacgccatacagaaaagtagatgatggtaaaattaat
ttagatgaatcaccaatttacctttctgcagaagaagaggaaggaatgaaaattgcacaa
gcaaacattccattagacgataaaggtaatattgaggcagaacgtgtaattgctcgtctt
gaaggagatttcccagtggaagatcctaagaacgtaaattatatagatgttgctccaaac
cagatatcatctatttctgcatctcttattccgttcctagaacatgatgatgcaaaccgt
gccttgatgggatctaacatgatgcgtcaagcagtaccattattaagagtagattctcca
attgtaggtacaggtcttgagcgtcaggtagcatcagattctagagtgcttattaatgca
gaaggtgcaggtactgtagagtatgttgatgctaatatggtaactattaagtatgataga
tcagaagaagaacgtcaagttagttttgatagtgattcaaaatcttacaacttaattaaa
ttccgtaaaactaaccaaggtacatctatcaaccttaagccaattgtaaaagttggtgac
cgtgttgaaagaggacaagtactttgtcaaggatatgcaacagaagctggagaacttgct
ttaggtagaaatatgaaagtagcctttatgccttggaaagggtataactttgaggatgca
attgtaatttcagaaaaagtagtacgtgaagatatatttacatctattcacgtagatgaa
tattctttagatgttagagatacaaaattaggtaatgaagaattaactaatgacatacca
aacgtttcagaagaggctactaaagaccttgatgaatatggtatgattcgtattggtgca
gaggttaagcctggagatatattaattggaaaaattactccaaaaggagaaagtgatcca
actccagaagaaaaattacttcgcgcaatatttggtgataaagcaggagatgtaaaagat
gcatctttaaaagcatcgccatctcttaacggtgttgtaatagataagaaattgtttgaa
agagcaattaaagataagcgtaagagagcacaagataaagaagatatagcaagacttgaa
gttgagtatgacgctaaatttgatgaccttaaagctgttttagttgaaaagttatttaac
ctaataggtggaaaaacagcacaaggtgttaagaatgatttaggggaagacattttacca
aaaggtaagaagtatactttaaaaatgcttaactctgttgaagattatactcaccttact
caaggtacgtggactacagatgatgagttaaatagtatggttgcagacttaatccataat
tataagattaaggaaaacgacttacaaggtaacttaagacgtgagaaatttactatttct
gtaggagatgagttgccagcaggtattatcaagttagcaaaaatttatattgctaaaaag
cgtaagcttaaggttggtgataaaatggcaggtcgtcacggtaacaaaggtattgtagca
cgtattgtacgtgaagaagatatgcctttcttagaagacggaacgccagtagatatcgta
cttaacccacttggtgtaccatctcgtatgaacatcgggcaaatttacgaaacagttctt
ggttgggcaggacaaaaattaggacgcaagtttgctactccaatttttgacggtgcaact
ttagaccaaataaatgaattaacagacgaagcaggtattcctcgttttggccatacacat
ttatatgatggtggtacaggagaccgttttgatcaaccagcaacagtaggtgttatctat
atgttgaagttaggtcacatggtagatgataagatgcacgctcgttctataggtccttac
tcattaattacacaacaaccattaggtggtaaagcacaatttggtggtcagcgttttggt
gagatggaggtttgggctcttgaagcatatggtgcatctagcactcttcgtgagatcctt
acagtaaaatctgatgatgttattggtagagcaaaaacttacgaaagtatagtaaaaggt
gagccaatgccagaaccaggattgcgagaatcttttaacgtgttaatgcacgaattaaaa
ggattaggacttgatattcgactcgaagaataa
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integrated database retrieval system