Clostridium botulinum B1 Okra: CLD_1016
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Entry
CLD_1016 CDS
T00671
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase, beta subunit
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
cbb
Clostridium botulinum B1 Okra
Pathway
cbb03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cbb00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CLD_1016 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cbb03021
]
CLD_1016 (rpoB)
03400 DNA repair and recombination proteins [BR:
cbb03400
]
CLD_1016 (rpoB)
Enzymes [BR:
cbb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CLD_1016 (rpoB)
Transcription machinery [BR:
cbb03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CLD_1016 (rpoB)
DNA repair and recombination proteins [BR:
cbb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CLD_1016 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
Motif
Other DBs
NCBI-ProteinID:
ACA46323
UniProt:
B1IGG2
LinkDB
All DBs
Position
complement(3787344..3791042)
Genome browser
AA seq
1232 aa
AA seq
DB search
MVHPVQVGKRTRMSFSRLKEVGQMPNLIEVQLDSYDWFLKEGLQEVFDDINPIQDYTGNL
NLEFVGYKLDLDSIKYSVEECKERDSTYAAPLKVKVRLLNKETGEIKEQEVFMGDFPLMT
EQGTFIINGAERVIVSQLVRSPGVYYDMTVDKTGSKLFSATVIPNRGAWLEYETDSNNII
YVRIDKTRKLPITILARALGYGTDAEIIEFFGEDERLKATIEKDNTKTREEALLEIYKRL
RPGEPPTVDSAESLIESLFFDAKRYDLSRVGRYKFNKKLAIHLRITNQIADQDIVNPQTG
EILVQKGEKIDKDKAIEIQSCGINEVYIKIDDKSFKVIGNHFVDIHSLVSFDISDLNIKE
YVFYPVLKEILDNYADEESIKEEIRKNIYRLIPKHIIREDIYATINYELALSYDIGYKDD
IDHLGNRRLRSVGELLQNQFRIGLSRMERVVKERMTIQDQEVITPQALINIRPVAASIKE
FFGSSQLSQFMDQTNPLSELTHKRRLSALGPGGLSRERAGFEVRDVHHSHYGRMCPIETP
EGPNIGLINSLATFAKVNEYGFIETPYRRIDPKNKRATNDIVYMTADEEDLYVIARSDEP
IDENGYFIDDKVTVRAKEEVLVVPVSEVEYMDISPRQLVSVATAMIPFLENDDASRALMG
SNMQRQAVPLLKPQAPIVGTGIEYKAATDSGVLPKAKNAGTVVYVSADEIRVRRDSDGGI
DKYKLLKFKRSNQGTCINQRPIVSKGEVVAKETLLADGPSTDLGEIALGKNILMGFITWE
GYNYEDAMLISEQLVKEDVFTSIHIEEYEAEARDTKLGPEEITRDIPNVGEEALKDIDER
GIIRIGAEVRSGDILVGKVTPKGETELTAEERLLRAIFGEKAREVRDTSLRVPHGEAGII
VDVKIFTRENGDELPPGVNKLVRCYIAQKRKISVGDKMAGRHGNKGVISRVLPEEDMPFL
PDGRPLQICLNPLGVPSRMNIGQVLEVHLGLAASKLGWHIATPVFDGAIESDIVDCLRKA
GYSEDGKTVLYDGRTGEPFDNRVTVGYMYILKLAHLVDDKIHARSTGPYSLVTQQPLGGK
AQFGGQRFGEMEVWALEAYGAAHTLQEILTVKSDDVVGRVKTYEAIVKGENIPEPGVPES
FKVLIKELQALCLDVKVLNDDNQEIKLKESVDEDADELEVNIEGTENQPEEKEEKEKEDS
DEYDDLREEDVEPDLEELSLDDLDLDDFGDEH
NT seq
3699 nt
NT seq
+upstream
nt +downstream
nt
atggtacatcctgtccaagttggcaaaaggactcgtatgagcttttctaggcttaaagag
gttggtcaaatgccaaaccttatagaagttcagttagactcatatgattggtttttaaaa
gaagggttacaagaagtttttgacgatattaacccgattcaagattatacaggtaatcta
aatttagaatttgtaggttacaaactggatttagatagtattaagtactctgttgaagag
tgtaaagaaagagattctacttatgcagcaccattaaaagtaaaagttagacttttaaac
aaggaaactggcgaaataaaagaacaagaagtttttatgggagacttccctttaatgaca
gaacaaggaacctttataataaacggtgcagaaagagttatagtaagccaattagttaga
tcaccaggggtttattatgacatgactgtagataaaacaggaagtaaattattttcagct
acagttatacctaacagaggtgcatggttagaatatgaaacagattcaaataacataata
tatgtaagaattgacaagacacgaaaattaccaattactatattagcaagagcactaggt
tatggaacagatgctgaaataatagaatttttcggagaagatgaaagattaaaagcaaca
atagaaaaagataacactaagactagagaagaggctttacttgaaatatataagagatta
cgaccaggtgaaccacctactgtggatagtgcagaatctttaattgaatctttattcttc
gatgctaaaagatatgatttatcaagagttggaagatataaatttaataaaaaactagca
atccatttaagaataacaaatcaaattgcagatcaagatatagttaatccacaaacagga
gaaattttagtacaaaaaggtgaaaaaatagataaagataaagctattgaaatacaaagc
tgtggcattaacgaagtatatatcaaaatagatgataagtcatttaaagtaattggcaat
cactttgtagacatacatagtttggtttcattcgatataagtgatttaaatattaaggaa
tatgtattctatcctgttttaaaagaaatactagataattatgctgatgaagaaagtata
aaagaagaaataagaaagaatatatatagattaattcctaaacatattataagagaagat
atatatgctaccataaattatgaattagcattaagttatgatattggttataaagatgat
atagatcatttaggaaatagaaggttgagatcagtaggagaattattacaaaatcaattt
agaattggtttatctagaatggaaagagttgttaaagaaagaatgacaattcaagatcaa
gaagtaataactcctcaagctttaataaatattagacctgtagctgcatctattaaagaa
ttttttggtagttcacagttatcacaatttatggatcaaacaaatcctctatcagaatta
acacataaaagaaggttatcagctctaggaccaggaggactttcaagagaaagggcaggt
tttgaggtaagagacgttcaccattcacattatggaagaatgtgtcctatagaaactcca
gaaggaccaaatataggtcttataaattctttagctacatttgctaaagttaatgaatat
ggatttatagaaacaccatatagaagaatagatcctaagaataaaagagccacaaatgat
atagtatatatgacagcggatgaagaagatctatacgtaatagctagatcagatgaacca
attgatgaaaatggatattttatagatgataaggttacagttagggctaaagaggaagtt
ttagttgttccagttagcgaagttgagtatatggatatatcaccaagacaattggtttct
gttgcaactgcaatgataccattccttgaaaatgatgatgccagccgtgcacttatggga
tcaaacatgcaacgtcaagcagtaccactattaaagccacaggctccaatagttggaaca
ggtatagaatataaagctgcaacggattcaggggttcttccaaaggctaaaaatgcaggg
acagtagtatatgtttcagcagatgaaataagagtaagacgagatagcgatggaggaata
gataaatataaattattaaaattcaaaagatctaaccaaggaacatgtataaatcaaaga
ccaattgtttctaaaggtgaagtagtagctaaggaaactctattagcagatggaccttct
acagatcttggagaaatagcacttggtaaaaatattcttatgggctttataacatgggaa
ggatataattacgaagatgccatgttaatttcagagcaattagtaaaagaagatgtgttt
acatctatacacatagaagaatatgaagctgaagctagggacacaaaactaggaccagaa
gagataacaagagatatacctaacgtaggagaagaagcgcttaaagatatagatgaaaga
ggtatcattagaattggtgctgaagttagatcaggagatatattagtaggtaaagttact
ccaaagggagaaactgaactaacagctgaagaaagattacttcgtgctatatttggagaa
aaagcaagagaggttagagatacatcacttagagttccacatggagaagcaggaattata
gttgatgttaaaatatttacaagagaaaatggtgatgaattaccaccaggagttaataaa
ttagttagatgctatatagctcaaaagagaaaaatatctgttggagataagatggcagga
agacatggtaataaaggggttatctctcgagttttaccagaagaagatatgccattctta
ccagatggaagaccacttcaaatatgcttaaatcctttaggggtaccatcacgtatgaat
ataggtcaggtgttagaagtacatttagggttagctgctagtaaattaggctggcatata
gctacaccggttttcgatggggcaatagaatctgacatagtagattgtttaagaaaagct
ggttattctgaagatggaaaaactgttctatatgatggaagaacaggagaaccatttgat
aatagagtaacagtaggatatatgtatattttaaaactagctcatttagttgatgataaa
atacatgctagatctacaggcccatactcactagtaactcaacaacctcttggaggtaaa
gctcagtttggaggacaaagatttggtgagatggaagtttgggccttagaagcttatgga
gcagctcatactcttcaagaaatattaacagttaaatcagatgatgtagttggaagagtt
aagacttatgaagctatagtaaagggagaaaatattccagaacctggagttcctgaatct
ttcaaagttttaataaaagaattacaagcattatgtttagatgttaaggtattgaatgat
gataatcaggaaataaaattaaaggaatctgtggatgaagatgcagacgaattagaagta
aatatagaaggtacagaaaatcaaccagaagagaaagaagaaaaagaaaaagaagatagt
gatgaatatgatgacttaagagaagaggacgtagaaccagatttagaagagttatcatta
gatgacttagatttagatgattttggtgatgaacattaa
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integrated database retrieval system
