KEGG   Clostridium botulinum F 230613: CBF_3541
Entry
CBF_3541          CDS       T01865                                 
Symbol
dnaE
Name
(GenBank) DNA polymerase III, alpha subunit
  KO
K02337  DNA polymerase III subunit alpha [EC:2.7.7.7]
Organism
cbm  Clostridium botulinum F 230613
Pathway
cbm03030  DNA replication
cbm03430  Mismatch repair
cbm03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:cbm00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    CBF_3541 (dnaE)
   03430 Mismatch repair
    CBF_3541 (dnaE)
   03440 Homologous recombination
    CBF_3541 (dnaE)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:cbm03032]
    CBF_3541 (dnaE)
   03400 DNA repair and recombination proteins [BR:cbm03400]
    CBF_3541 (dnaE)
Enzymes [BR:cbm01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     CBF_3541 (dnaE)
DNA replication proteins [BR:cbm03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    DNA polymerase III holoenzyme
     CBF_3541 (dnaE)
DNA repair and recombination proteins [BR:cbm03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA polymerase III holoenzyme
     CBF_3541 (dnaE)
SSDB
Motif
Pfam: DNA_pol3_alpha DNA_pol3_finger PHP HHH_6 tRNA_anti-codon HROB MotCF tRNA_anti_2
Other DBs
NCBI-ProteinID: ADG01089
LinkDB
Position
complement(3711503..3715060)
AA seq 1185 aa
MGKNQFDEKKPEWVSLHQHTEYSLLDSSAKISDLIKRAKEFGMKSIAITDHGVMYGCVDF
YKEAIKQGIKPIIGCEIYVASKSMYIKQQDKENETHHLVLLVKNEIGYKNLMEIVSNASV
EGFYYKPRVDHEFLKDHSEGLIALSACLGGEVQANILKENLKKAGEVALIYKDIFKEGFY
LELQYHGMEEQLKVNETLVKMSKDLDIPLVATNDVHYIRKEDYKSHDILLCIQTGKTVEE
ENRMRYPSDQFYLKSPEEMYETFSYVPEALENTVKISEECNFDYNFHESKLPKFPLEEGV
DPYEYLRKICFKGLFLRYEVLKDFIDKPFSIDEVLVYGDENKEAFDLIERLNYELSIIKQ
MGYVDYFLIVWDFIRFANEKGIMTGPGRGSAAGSLVAYTLGITKIDPIKYNLIFERFLNP
DRISMPDIDSDFCYERRGEVIDYVVEKYGKANVSQIITFGTMAARACIRDVGRAMNYPYA
EVDRIAKMIPTVLNITINKALELNPELKEAYDNEERVKALIDVARALEGLPRHTSTHAAG
VVIASQSLVNYVPLQKNEESIVTQFTMGTLEELGLLKMDFLGLRTLTVMRDAVRIIKENK
GIDIDLDTIDFEDKEVYKMIGQGKTVGVFQLESAGMTSFMKELKPDSLEDIIAGISLYRP
GPMAEIPRYIANKNNPLNIEYQTEKLEPILSVTYNCIVYQEQVMQIVRDLAGYSMGRSDL
VRRAMSKKKHDVMEQERRNFIYGNEDQGVKGCINNGIDENVANSLFDSMMDFASYAFNKS
HAAAYAVVGFQTAYLIRYYPTEFIAAMLNSVKGDNDKVSFYVNFAKTLGIEIIAPNINES
YSNFTVKDNRIIFGLTAVKNVGEKGIDNIVLSREQKDKFIDLSDFFNKVDTSIINKRLVE
SLIKAGAFDCLKVYRSKMLAVFEKIMDGIQKQKRNNIEGQVNLFMDIMDNKESSIDIKYP
NIKEFDKKYILQMEKEMTGLYFSGHPLEEYEETLKIQTSHLISDIIPKESLEGNLVDTIS
SIKDGDKVVVGGMITHVSKKLTRNNDMMAFIVLEDLYSSIEVIVFPKIFNMARNIINEDE
VVLLKGRVSLREDEQPKLICEFMEPLVKINSEKLYILVEEKKDIKLKLQETKGVFLQHKG
NIPVYFCTNKERKKFRIDRELWVNGSRELMDNLRNMFGENNVKIL
NT seq 3558 nt   +upstreamnt  +downstreamnt
atgggaaaaaatcaatttgatgagaagaagccagagtgggtaagtttacatcaacataca
gagtattcattattagactcttcggcaaaaatatcagatcttataaagagagcaaaagag
tttggtatgaaaagtattgctattacagatcatggagttatgtatggatgtgtagatttt
tataaagaagcgataaaacaaggaataaagcctataataggctgtgaaatatatgtagca
tcaaagtctatgtacataaaacaacaagacaaagaaaatgaaacccatcatttagtattg
ctagtaaagaatgaaatagggtacaaaaacttaatggagatagtatcaaatgcatctgta
gagggattctattataagcctagagtggatcatgaatttttaaaagatcatagtgaagga
ttaatagcattaagtgcatgtttaggaggagaagttcaagctaacatattaaaagaaaat
ttaaaaaaagctggagaagtagcattaatctataaagatatttttaaagaaggattttat
ttagaacttcaatatcatggtatggaagagcaattaaaggttaatgaaacattagttaag
atgtctaaggatttagatatacctttagtggctacaaatgatgtccattatataagaaaa
gaagattataaatcccatgatatattgttatgcatacaaacaggtaaaactgtagaggaa
gaaaatagaatgagatatccatctgatcagttttatttaaaatcaccagaggaaatgtat
gaaaccttttcttatgtaccagaggctttagaaaatacggttaagatatcagaagaatgt
aattttgattataattttcatgaatcaaaattacccaagtttccactagaagaaggggta
gatccctatgaatacttaaggaaaatatgctttaaaggactatttttaagatatgaagta
cttaaagattttatagataaaccctttagtattgatgaagttttagtctatggtgatgaa
aataaagaagcttttgatttaatagagagattaaattatgagttatctataataaaacaa
atgggatatgtagattattttttaatagtatgggattttataagatttgctaatgaaaag
ggaataatgacaggcccaggaagaggatctgcagcaggatctttagtagcctatacttta
ggaataactaaaattgaccctattaaatataatctaatatttgaaaggtttctaaatccg
gatcgtatatctatgcctgatatagatagtgatttttgttatgaaagacgaggagaagtt
atagattatgtggtagaaaaatatggcaaggctaatgtatcacaaataataacttttgga
actatggctgcaagagcttgtataagagatgtaggaagggctatgaactatccttatgca
gaagtagatagaatagctaaaatgatacctactgttttaaatataactataaataaagct
ttagagttgaatccggaattaaaagaggcttatgataatgaagagagagttaaagcgcta
atagatgtggcaagggctttggaagggcttccaagacatacatctactcatgctgcaggg
gtagttatagcatcacaatccttagtaaattatgtaccccttcaaaaaaatgaagaaagt
atagtaacacagtttacaatgggtactttggaagaactaggacttttaaaaatggatttt
ctcggacttagaactcttactgttatgagagatgctgtaagaattataaaagaaaataaa
ggaatagatattgatttagatactattgattttgaagataaagaagtttacaaaatgata
ggacagggtaaaactgtaggagtatttcaattagagtctgctggaatgacatcctttatg
aaggagttaaaaccagattccctagaagatataatagcaggaataagtttatatagacca
ggccctatggctgaaataccaagatatatagctaataaaaataaccctttaaatatagaa
tatcaaacagaaaaactagaacctatattgtccgttacatacaattgtatagtttatcaa
gaacaagttatgcaaatagttagagatttggcaggatactctatgggacgtagtgacttg
gtaagacgtgccatgtctaagaaaaaacatgatgtaatggaacaggaaagaagaaatttt
atatatggtaatgaagatcaaggtgtaaaaggatgcataaataatggtatagatgaaaat
gtagctaatagtttatttgattctatgatggatttcgcttcctatgcatttaacaaatcc
catgcagcagcttatgcagtagtaggttttcagacagcttatttgattagatattatccc
acagagtttattgcagctatgctaaatagtgtaaagggtgataatgataaggtatctttt
tatgttaattttgcaaaaactttaggaatagaaataatagctcctaatataaatgaaagt
tatagtaattttacagtaaaagataatagaataatatttggattaactgcagtaaaaaat
gtgggagaaaagggtatagataatatagttttatctagagaacaaaaggacaaatttata
gatttaagtgattttttcaataaagtagatacctcaattataaataaaaggttagtagaa
agtttaataaaagcaggagcctttgattgtttaaaggtatatcgttctaaaatgttagct
gtttttgaaaaaataatggatggtatacaaaagcagaaaagaaataacatagaaggtcag
gttaatttatttatggatattatggataacaaagaaagtagtatagatataaaatatcct
aatataaaggagtttgacaaaaaatatatacttcaaatggaaaaagaaatgacaggattg
tatttttccggtcatccattggaagaatatgaagaaacattaaaaattcaaacaagtcat
cttatatcagatattattcctaaggaatctttagaaggaaacttggtagatactataagc
agtataaaagacggagataaagtagtagtaggtggtatgattactcacgtaagtaagaaa
ttaactagaaataatgatatgatggcatttatagtattagaagatctatattccagtata
gaagttatagtattccctaaaatttttaatatggccagaaacataataaatgaagatgaa
gtagtcttattaaaaggaagagtaagtctaagagaggatgaacaaccaaagttaatttgt
gaatttatggagccgcttgtaaaaattaattctgaaaaattatatatattagtagaagaa
aaaaaggatataaaactaaagttacaagaaacaaagggtgtatttttgcaacataaaggt
aatatacctgtatacttttgtacaaataaagaaagaaaaaagtttagaattgatagagaa
ctttgggtaaatggaagcagggaattaatggataacttaagaaatatgtttggagaaaat
aatgtaaaaatactttaa

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