Clostridium botulinum F 230613: CBF_3541
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Entry
CBF_3541 CDS
T01865
Symbol
dnaE
Name
(GenBank) DNA polymerase III, alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
cbm
Clostridium botulinum F 230613
Pathway
cbm03030
DNA replication
cbm03430
Mismatch repair
cbm03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
cbm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CBF_3541 (dnaE)
03430 Mismatch repair
CBF_3541 (dnaE)
03440 Homologous recombination
CBF_3541 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cbm03032
]
CBF_3541 (dnaE)
03400 DNA repair and recombination proteins [BR:
cbm03400
]
CBF_3541 (dnaE)
Enzymes [BR:
cbm01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
CBF_3541 (dnaE)
DNA replication proteins [BR:
cbm03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
CBF_3541 (dnaE)
DNA repair and recombination proteins [BR:
cbm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
CBF_3541 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
HROB
MotCF
tRNA_anti_2
Motif
Other DBs
NCBI-ProteinID:
ADG01089
LinkDB
All DBs
Position
complement(3711503..3715060)
Genome browser
AA seq
1185 aa
AA seq
DB search
MGKNQFDEKKPEWVSLHQHTEYSLLDSSAKISDLIKRAKEFGMKSIAITDHGVMYGCVDF
YKEAIKQGIKPIIGCEIYVASKSMYIKQQDKENETHHLVLLVKNEIGYKNLMEIVSNASV
EGFYYKPRVDHEFLKDHSEGLIALSACLGGEVQANILKENLKKAGEVALIYKDIFKEGFY
LELQYHGMEEQLKVNETLVKMSKDLDIPLVATNDVHYIRKEDYKSHDILLCIQTGKTVEE
ENRMRYPSDQFYLKSPEEMYETFSYVPEALENTVKISEECNFDYNFHESKLPKFPLEEGV
DPYEYLRKICFKGLFLRYEVLKDFIDKPFSIDEVLVYGDENKEAFDLIERLNYELSIIKQ
MGYVDYFLIVWDFIRFANEKGIMTGPGRGSAAGSLVAYTLGITKIDPIKYNLIFERFLNP
DRISMPDIDSDFCYERRGEVIDYVVEKYGKANVSQIITFGTMAARACIRDVGRAMNYPYA
EVDRIAKMIPTVLNITINKALELNPELKEAYDNEERVKALIDVARALEGLPRHTSTHAAG
VVIASQSLVNYVPLQKNEESIVTQFTMGTLEELGLLKMDFLGLRTLTVMRDAVRIIKENK
GIDIDLDTIDFEDKEVYKMIGQGKTVGVFQLESAGMTSFMKELKPDSLEDIIAGISLYRP
GPMAEIPRYIANKNNPLNIEYQTEKLEPILSVTYNCIVYQEQVMQIVRDLAGYSMGRSDL
VRRAMSKKKHDVMEQERRNFIYGNEDQGVKGCINNGIDENVANSLFDSMMDFASYAFNKS
HAAAYAVVGFQTAYLIRYYPTEFIAAMLNSVKGDNDKVSFYVNFAKTLGIEIIAPNINES
YSNFTVKDNRIIFGLTAVKNVGEKGIDNIVLSREQKDKFIDLSDFFNKVDTSIINKRLVE
SLIKAGAFDCLKVYRSKMLAVFEKIMDGIQKQKRNNIEGQVNLFMDIMDNKESSIDIKYP
NIKEFDKKYILQMEKEMTGLYFSGHPLEEYEETLKIQTSHLISDIIPKESLEGNLVDTIS
SIKDGDKVVVGGMITHVSKKLTRNNDMMAFIVLEDLYSSIEVIVFPKIFNMARNIINEDE
VVLLKGRVSLREDEQPKLICEFMEPLVKINSEKLYILVEEKKDIKLKLQETKGVFLQHKG
NIPVYFCTNKERKKFRIDRELWVNGSRELMDNLRNMFGENNVKIL
NT seq
3558 nt
NT seq
+upstream
nt +downstream
nt
atgggaaaaaatcaatttgatgagaagaagccagagtgggtaagtttacatcaacataca
gagtattcattattagactcttcggcaaaaatatcagatcttataaagagagcaaaagag
tttggtatgaaaagtattgctattacagatcatggagttatgtatggatgtgtagatttt
tataaagaagcgataaaacaaggaataaagcctataataggctgtgaaatatatgtagca
tcaaagtctatgtacataaaacaacaagacaaagaaaatgaaacccatcatttagtattg
ctagtaaagaatgaaatagggtacaaaaacttaatggagatagtatcaaatgcatctgta
gagggattctattataagcctagagtggatcatgaatttttaaaagatcatagtgaagga
ttaatagcattaagtgcatgtttaggaggagaagttcaagctaacatattaaaagaaaat
ttaaaaaaagctggagaagtagcattaatctataaagatatttttaaagaaggattttat
ttagaacttcaatatcatggtatggaagagcaattaaaggttaatgaaacattagttaag
atgtctaaggatttagatatacctttagtggctacaaatgatgtccattatataagaaaa
gaagattataaatcccatgatatattgttatgcatacaaacaggtaaaactgtagaggaa
gaaaatagaatgagatatccatctgatcagttttatttaaaatcaccagaggaaatgtat
gaaaccttttcttatgtaccagaggctttagaaaatacggttaagatatcagaagaatgt
aattttgattataattttcatgaatcaaaattacccaagtttccactagaagaaggggta
gatccctatgaatacttaaggaaaatatgctttaaaggactatttttaagatatgaagta
cttaaagattttatagataaaccctttagtattgatgaagttttagtctatggtgatgaa
aataaagaagcttttgatttaatagagagattaaattatgagttatctataataaaacaa
atgggatatgtagattattttttaatagtatgggattttataagatttgctaatgaaaag
ggaataatgacaggcccaggaagaggatctgcagcaggatctttagtagcctatacttta
ggaataactaaaattgaccctattaaatataatctaatatttgaaaggtttctaaatccg
gatcgtatatctatgcctgatatagatagtgatttttgttatgaaagacgaggagaagtt
atagattatgtggtagaaaaatatggcaaggctaatgtatcacaaataataacttttgga
actatggctgcaagagcttgtataagagatgtaggaagggctatgaactatccttatgca
gaagtagatagaatagctaaaatgatacctactgttttaaatataactataaataaagct
ttagagttgaatccggaattaaaagaggcttatgataatgaagagagagttaaagcgcta
atagatgtggcaagggctttggaagggcttccaagacatacatctactcatgctgcaggg
gtagttatagcatcacaatccttagtaaattatgtaccccttcaaaaaaatgaagaaagt
atagtaacacagtttacaatgggtactttggaagaactaggacttttaaaaatggatttt
ctcggacttagaactcttactgttatgagagatgctgtaagaattataaaagaaaataaa
ggaatagatattgatttagatactattgattttgaagataaagaagtttacaaaatgata
ggacagggtaaaactgtaggagtatttcaattagagtctgctggaatgacatcctttatg
aaggagttaaaaccagattccctagaagatataatagcaggaataagtttatatagacca
ggccctatggctgaaataccaagatatatagctaataaaaataaccctttaaatatagaa
tatcaaacagaaaaactagaacctatattgtccgttacatacaattgtatagtttatcaa
gaacaagttatgcaaatagttagagatttggcaggatactctatgggacgtagtgacttg
gtaagacgtgccatgtctaagaaaaaacatgatgtaatggaacaggaaagaagaaatttt
atatatggtaatgaagatcaaggtgtaaaaggatgcataaataatggtatagatgaaaat
gtagctaatagtttatttgattctatgatggatttcgcttcctatgcatttaacaaatcc
catgcagcagcttatgcagtagtaggttttcagacagcttatttgattagatattatccc
acagagtttattgcagctatgctaaatagtgtaaagggtgataatgataaggtatctttt
tatgttaattttgcaaaaactttaggaatagaaataatagctcctaatataaatgaaagt
tatagtaattttacagtaaaagataatagaataatatttggattaactgcagtaaaaaat
gtgggagaaaagggtatagataatatagttttatctagagaacaaaaggacaaatttata
gatttaagtgattttttcaataaagtagatacctcaattataaataaaaggttagtagaa
agtttaataaaagcaggagcctttgattgtttaaaggtatatcgttctaaaatgttagct
gtttttgaaaaaataatggatggtatacaaaagcagaaaagaaataacatagaaggtcag
gttaatttatttatggatattatggataacaaagaaagtagtatagatataaaatatcct
aatataaaggagtttgacaaaaaatatatacttcaaatggaaaaagaaatgacaggattg
tatttttccggtcatccattggaagaatatgaagaaacattaaaaattcaaacaagtcat
cttatatcagatattattcctaaggaatctttagaaggaaacttggtagatactataagc
agtataaaagacggagataaagtagtagtaggtggtatgattactcacgtaagtaagaaa
ttaactagaaataatgatatgatggcatttatagtattagaagatctatattccagtata
gaagttatagtattccctaaaatttttaatatggccagaaacataataaatgaagatgaa
gtagtcttattaaaaggaagagtaagtctaagagaggatgaacaaccaaagttaatttgt
gaatttatggagccgcttgtaaaaattaattctgaaaaattatatatattagtagaagaa
aaaaaggatataaaactaaagttacaagaaacaaagggtgtatttttgcaacataaaggt
aatatacctgtatacttttgtacaaataaagaaagaaaaaagtttagaattgatagagaa
ctttgggtaaatggaagcagggaattaatggataacttaagaaatatgtttggagaaaat
aatgtaaaaatactttaa
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