KEGG   Clostridium butyricum: ATN24_09885
Entry
ATN24_09885       CDS       T04197                                 
Name
(GenBank) RNA-binding protein hfq
  KO
K03666  host factor-I protein
Organism
cbut  Clostridium butyricum
Pathway
cbut02024  Quorum sensing
cbut03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:cbut00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    ATN24_09885
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    ATN24_09885
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cbut03019]
    ATN24_09885
   03036 Chromosome and associated proteins [BR:cbut03036]
    ATN24_09885
Messenger RNA biogenesis [BR:cbut03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     ATN24_09885
Chromosome and associated proteins [BR:cbut03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    ATN24_09885
SSDB
Motif
Pfam: Hfq LSM
Other DBs
NCBI-ProteinID: ALP90436
UniProt: A0A0A6PV01
LinkDB
Position
1:complement(2195467..2195697)
AA seq 76 aa
MVNKTVNNIQDIFLNNARKNRTNLTVHLLNGFQIKGIVKGFDNFTVILECDENMMLIYKH
SISTITPEKPIPFINN
NT seq 231 nt   +upstreamnt  +downstreamnt
ttggtcaataaaacagttaataatattcaagatatttttctaaataatgcacgaaaaaat
agaactaatttaacagttcatttattaaatggttttcaaattaaagggattgtaaaagga
tttgataattttacagttatcttagaatgtgatgagaatatgatgttaatatataaacat
tcaatttcaacaataacacctgaaaagccaataccttttattaataattaa

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