Clostridium carboxidivorans: Ccar_19865
Help
Entry
Ccar_19865 CDS
T03979
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
cck
Clostridium carboxidivorans
Pathway
cck03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cck00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Ccar_19865
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cck03021
]
Ccar_19865
03400 DNA repair and recombination proteins [BR:
cck03400
]
Ccar_19865
Enzymes [BR:
cck01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Ccar_19865
Transcription machinery [BR:
cck03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Ccar_19865
DNA repair and recombination proteins [BR:
cck03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Ccar_19865
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
AKN32986
UniProt:
C6Q0W6
LinkDB
All DBs
Position
complement(4448248..4451946)
Genome browser
AA seq
1232 aa
AA seq
DB search
MVHPVQVGKRTRMSFSKLKEVGEMPNLIEVQLNSYNWFLKEGLQEVFDDINPIQDYTGNL
NLEFVGYKLDMDNIKYTVEECKERDSTYAAPLKVKVRLLNKETGEVKEQEVFMGDFPLMT
EQGTFIINGAERVIVSQLVRSPGVYYDMSVDKTGKKLFSATVIPNRGAWLEYETDSNDII
YVRIDKTRKLPITILARAMGYGTDAEITEFFGEDERLKATIEKDNTKTREEALLEIYKRL
RPGEPPTVDSAQSLIESLFFDPKRYDLSRVGRYKFNKKLALNLRIANQISAQDIVNPQTG
EILVEKGEKISREKALEIQNCGVNMVNVQLEDRVIKIIGNNFVNIHNFVDFNIDDLNIKE
LVHYPALKQILDNYSDEDSIKEQIKKNIHALIPKHIIRDDIYTTINYELGLPYDIGHTDD
IDHLGNRRLRSVGELLQNQFRIGLSRMERVVKERMTIQDQEVITPQALINIRPVAAAIKE
FFGSSQLSQFMDQTNPLSELTHKRRLSALGPGGLSRERAGFEVRDVHHSHYGRMCPIETP
EGPNIGLINSLAAYAKVNEYGFIETPYRIVDKKTGTVQKKIVYMTADEEDEYVIAQANEP
LDEEGHFIDSKVTVRDQEDVLVVPAQDVDLMDISARQIVSVATAMIPFLENDDASRALMG
SNMQRQAVPLLKPQAPIVGTGIEFKAAVDSGVLPKAKNAGTVVYVSANEVRVKRDSDGGI
DTYRLLKFKRSNQSSCINQRPIVSKGEKVDKGTVLSDGPSTDLGEIALGKNIRMGFITWE
GYNYEDAMLISEELVKKDVFTSIHIEEYEAEARDTKLGPEEITRDIPNVGEDALKDIDER
GIIRIGAEVRSGDILVGKVTPKGETELTAEERLLRAIFGEKAREVRDTSLRVPHGEAGII
VDVKIFTRENGDELPPGVNKLVRCYIVQKRKISVGDKMAGRHGNKGVISRVLPEEDMPFL
PDGRPLQICLNPLGVPSRMNIGQVLEVHLGWAASEMGWHIATPVFDGATEEDIVQCLKDA
GYDESGKTVLYDGRTGDAFDNPVTVGYMYILKLAHLVDDKIHARSTGPYSLVTQQPLGGK
AQFGGQRFGEMEVWALEAYGAAHTLQEILTVKSDDVVGRVKTYEAIVKGENIPEPGVPES
FKVLIKELQALCLDVKVLNDDNQEIKLKESVDEEIQDLGVNMEGSEEFVPPTPTDDYVES
EDSDEDLELDYDDLSLDEIQGNLEIDDFNDEH
NT seq
3699 nt
NT seq
+upstream
nt +downstream
nt
atggtacatcctgtccaggttggtaagagaacaagaatgagcttttccaaacttaaagaa
gtaggtgaaatgcctaatttaattgaggtacagctaaattcctataattggtttttaaag
gaaggtttacaggaagtatttgatgatattaatcctattcaggattatacaggtaatcta
aatctagaatttgttggatacaaactagatatggataatattaaatacactgttgaagaa
tgcaaagaaagagattctacgtatgcagcgcctttaaaagtaaaagttagactattaaac
aaagagactggtgaagtaaaagaacaggaagttttcatgggagattttcctcttatgaca
gagcaaggaacgtttattattaatggagctgaaagagtaatagttagtcaattggtaaga
tcaccaggtgtttattatgatatgtcagttgataaaacaggtaaaaaacttttttctgca
acagtaataccaaacagaggtgcttggctagaatatgaaacagattccaatgacataata
tatgtaagaatagacaaaacaagaaaattacctataactattcttgcaagagcaatgggt
tatggaacagatgccgaaattactgagttttttggcgaagatgaaagattaaaagcaaca
atagaaaaagataatacaaaaacacgtgaagaggcactacttgaaatatataagagatta
agaccaggtgaaccacctacagttgatagtgctcaatcacttattgaatcattatttttt
gatcctaagagatatgatctttcaagggttggaagatataagtttaataaaaagttggct
ttaaatcttagaattgccaatcagatatctgcacaagatattgttaacccacaaacaggt
gaaatacttgttgaaaagggtgaaaaaataagtagagaaaaagctctagaaattcaaaat
tgtggcgttaatatggtaaatgttcaacttgaggatagagttataaaaattataggtaat
aactttgtaaacatacataattttgtggactttaatatagatgacttaaatataaaagag
cttgtacattatcctgctttaaaacaaatattggataattatagtgatgaagatagtata
aaagaacaaattaagaagaatatacatgcattgataccaaaacatataataagagatgat
atatatactactataaattatgagctaggattaccatacgatattggtcatacagatgat
attgatcatcttggtaatagaagacttagatctgttggtgaattacttcagaatcaattt
agaataggtctatctagaatggaaagagtagttaaagaaagaatgactattcaagatcaa
gaagttataactccacaagctttgataaatattagacctgtggcagctgctataaaagaa
ttctttggtagttcacagctttcacagtttatggatcaaacaaatccgttatcagaactt
actcataagagaagactatcagcattaggaccaggtggactttcaagagaaagggctggt
tttgaagttagagacgttcaccattcacattatggtagaatgtgtcctatagaaacacca
gaaggtccaaatataggacttattaactcattggctgcttatgcaaaggtaaatgagtat
ggatttatagaaacaccttatagaatagtagataaaaagactggtacagttcaaaagaaa
atagtatatatgacagcagacgaagaagatgaatatgtcattgcgcaggcaaatgaaccg
cttgatgaagagggacattttatagacagtaaagtaacagtaagagatcaagaagatgta
cttgtagttccagctcaagatgttgatcttatggatatatctgctagacagatagtttct
gtagctacagctatgataccattccttgagaatgatgatgccagccgtgcgcttatggga
tctaacatgcagcgtcaagcagtacctctattaaaacctcaagctcctattgtaggaaca
ggtatagagtttaaagcagctgtagattcaggggttcttcctaaggctaaaaatgctgga
acagttgtttatgttagtgctaatgaagtaagagtaaaaagggattcagatggtggcata
gatacctatagacttttaaaatttaaaagatctaaccaaagttcgtgtataaatcaaaga
cctatagtaagtaaaggtgaaaaagtagataagggaacagtattatcagatggaccatct
acagaccttggagaaattgcattaggtaaaaacataagaatgggatttataacatgggaa
ggttataactatgaagatgctatgcttatatcagaagaactagttaaaaaagatgtgttt
acatcaattcatatagaagaatatgaagcagaagcaagagatacaaaattaggaccagaa
gaaataacaagagatataccaaatgttggtgaagatgctttaaaggatatagatgaaaga
ggaataataagaataggtgccgaggtaaggtctggagatatattagtaggtaaagttact
ccaaagggagaaacagaacttacagcagaagaaagattacttagagcaatattcggagaa
aaagctagggaagtaagagatacttcacttagagtacctcatggtgaagctggtataatt
gtagatgtgaaaatatttacaagagaaaatggagatgaacttccaccaggagttaacaag
ttagttagatgctatatagttcaaaaaagaaaaatatctgtaggagataaaatggcagga
agacatggtaacaaaggtgttatatcaagagtgttaccagaagaagatatgcctttctta
ccagatggaagaccacttcaaatatgtttgaatcctctaggcgttccttctcgtatgaac
ataggtcaggtacttgaagttcacttaggatgggcagctagtgaaatgggatggcatata
gcaactcctgtatttgatggagcaacggaagaagatatagtacaatgtttaaaggatgca
ggatatgatgagagtggaaaaacagtactatatgatggaagaactggagacgcatttgac
aatccagtaacagttggatacatgtatatattaaaacttgcacatttggttgatgataaa
atacatgctagatctactggaccatattcattagttactcaacagccattaggtggtaaa
gcacagttcggaggacaaagatttggagaaatggaagtttgggctttagaagcatatggt
gctgctcatacacttcaagaaatattaacagttaaatctgatgacgttgtaggaagagtt
aagacttatgaagctattgttaagggtgagaatataccagaacctggagttcctgaatca
tttaaggttcttataaaagaattgcaggctttatgcttagatgtaaaagtgcttaatgat
gacaatcaagaaattaaattaaaagaatctgtagatgaagaaatacaagatttaggtgta
aatatggaaggaagcgaagagttcgttccaccaactccaactgatgattatgttgaatct
gaagatagtgatgaagatttagaacttgactatgatgacttatctttagatgaaattcaa
ggtaatttagaaatagatgattttaatgacgaacattag
DBGET
integrated database retrieval system
