Acetivibrio clariflavus: Clocl_0797
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Entry
Clocl_0797 CDS
T01661
Name
(GenBank) hypothetical protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
ccl
Acetivibrio clariflavus
Brite
KEGG Orthology (KO) [BR:
ccl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ccl03016
]
Clocl_0797
Enzymes [BR:
ccl01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
Clocl_0797
Transfer RNA biogenesis [BR:
ccl03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
Clocl_0797
Prokaryotic type
tRNA splicing ligases
Clocl_0797
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
HPF1
DUF592
Motif
Other DBs
NCBI-ProteinID:
AEV67497
UniProt:
G8LVT0
LinkDB
All DBs
Position
918585..919775
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AA seq
396 aa
AA seq
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MIQVRGKYNTAKIFTDNVEEAAMAQIIELCNQEFVKDSIIRIMPDTHAGAGCTIGTTMTI
SDKIVPNLVGVDIGCGMETIKLKNKDIDLEKLDRVIHEYIPSGFDIRKKKHPYADKVDFA
HLVCKESVNLERAELSIGTLGGGNHFIEVNKHETGQLYLVVHSGSRHLGKQVAEFYQELG
YRELVKNNEYISELIKELKAQGREKEIQQEIKKVKPVKISKQLAYVQGKSYNDYLNDMKI
VQKFAVLNRKAIVDEIVNRMEFEVIEQFTTIHNYIDLDSMILRKGAISARSGEVVLIPMN
MRDGSLICIGKGNKDWNYSAPHGAGRLMSRSKAKEVISLEEFEKSMEGIYSTTVNRSTLD
ECALAYKPMDEIIANIQDTVDIINIIKPIYNFKAAE
NT seq
1191 nt
NT seq
+upstream
nt +downstream
nt
atgatacaagtcagaggaaagtataatacggctaaaatttttaccgataacgtagaagag
gctgcaatggcgcagataattgagctttgcaatcaggagtttgtgaaggacagtattata
aggattatgcctgatacccatgccggtgcaggctgtacaatcggaactactatgactatt
tccgacaagatagtgccgaatttggttggcgttgatataggctgtgggatggagacaata
aaattgaaaaacaaagatatagacttggagaaattggacagggttatccatgaatatata
ccttccggttttgacattaggaaaaagaaacatccctatgctgataaagtagattttgcc
catctggtgtgtaaagaaagtgtaaacttggagagagcagagcttagcattggtacttta
ggcggcggtaaccattttattgaggtaaacaaacacgaaaccggacaattgtatcttgtt
gtacattcgggaagcaggcatctcggtaaacaagtagcggagttttaccaggaacttggc
tatagggaactggtaaagaataatgagtatatttcggagcttatcaaggagttaaaggcg
caggggcgtgaaaaggagattcaacaggaaattaagaaggttaaacctgtgaaaataagc
aaacagttggcttatgttcagggcaaaagctataacgactacctgaatgatatgaagata
gtacagaaatttgcagtgttaaaccgaaaagccattgttgatgagattgtaaacagaatg
gaatttgaagttattgaacagtttaccacaatacataactatatagatcttgacagtatg
attttaagaaagggagcgatttcagcacgcagtggcgaagttgttttaataccgatgaat
atgagggatggaagtttaatttgcattggaaagggaaataaggattggaattactcggca
ccccatggagcaggaagacttatgagcaggagcaaggcaaaggaagtcatcagcctcgaa
gaatttgagaagtctatggaaggtatctattctacaacggttaacagatccaccttagat
gaatgcgctttggcatataagcccatggacgaaataattgcaaatatacaggatacggta
gatattattaatataattaaacctatatataattttaaagcagcggaataa
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