Cryptobacterium curtum: Ccur_04000
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Entry
Ccur_04000 CDS
T00962
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
ccu
Cryptobacterium curtum
Pathway
ccu03410
Base excision repair
ccu03430
Mismatch repair
ccu03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ccu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Ccur_04000
03430 Mismatch repair
Ccur_04000
03440 Homologous recombination
Ccur_04000
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ccu03400
]
Ccur_04000
DNA repair and recombination proteins [BR:
ccu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
Ccur_04000
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
Ccur_04000
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Ccur_04000
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecJ_OB
DHH
Helicase_C
DEAD
DHHA1
ResIII
SNF2-rel_dom
SecA_DEAD
AAA_22
ssDNA-exonuc_C
Motif
Other DBs
NCBI-ProteinID:
ACU94123
UniProt:
C7MMI3
LinkDB
All DBs
Position
467884..471288
Genome browser
AA seq
1134 aa
AA seq
DB search
MCDNRAEKQETNRKGCTVPAQFYIHEADPAATEVLCKTLGLPRFIAATLVARGISSPQEA
GEFLRPSLARDWGNPYCIPGMDEVVGGLEAAVRSGKRIMVFGDFDLDGISSTAVLTRGLR
ELGGEVVPFIPRRQDEGYGITEAAIERLMKDEPDLLVTVDCGIACRNEVRLLKNRGVDVF
ITDHHEPADLVPEEVPVCDPKIDPDCSESILAGVGVALKLIQALGARFGQPHLWREYTDL
ATLGTIADLMPMQQDNRALVADGVAHMNESPRPCIAALLHSAGVADKPVSSTSLSFSVIP
RLNAAGRMGDAMLALNLLLEDDAHRAQDIAADLEAVNSQRRAIEAELAEIATLQAQEIYQ
GQRALIVAGEGWHEGVKGIVASRLARSYGVPTILFAIDEEGIARGSGRSVGSVNLFKAVE
SCSDMLIRFGGHEAAVGVTLSAADLPAFTKRLCAFMDGLDKNCFHPRIDIDACVNLDELT
VENVEALEQLAPFGQGNRQPTYLAQNVMLTRSRAVGADKNHFSTVLTDGAHTVSGIMFHC
AYIDRLMHCDSVVNAGFEVQVDEWRGRRSVKAMLSSIYPAQPCVALESMLDPEQKSFVSE
LYAASDAELVADCEDAPEEVTRLDAEREQNRQHWEQVAAQDPQSLREAVVQALIGDGALF
NSQKQILSALDNNIDTLAVMATGRGKSLTFQVHAATRALASGQASLFVYPLRALIADQAY
HLNHALLPFGLNAEVLTGESAPEERQRIFEGLVQGTVDIVLTTPEFLTIHANRLAQSGRI
GFLVVDEAHHIGQARAGNRMAYAYIDRAIARLGNPCVLALTATADAQCAQAIEETLGCHH
RVLDRTERKNLVLDDQRNLKQSDPYLANLVSQGAKMVIYVNSRRHSVALARSLRKRVPQM
APFIGFYNAGLARPDRCRVEELFRTGQLTVLVSTSAFGEGVNIPDIRHVVLYHMPFNEIE
FNQMSGRAGRDGKEAVVHLLFSVTDARINEGILADATPNHDTLAQVYRELKRLSAEADGS
PLRVSDADLAQICSDRQPALRMSQDSVACAIAVFRELGLVETEVSATQGEHRLIRLIEAH
GNKAELTDSVRYREGLDEIEIFRTFCHWVGSATAPVLQSRIIRPILPDESQEEV
NT seq
3405 nt
NT seq
+upstream
nt +downstream
nt
ttgtgcgacaatagggcagaaaaacaagagacaaaccgcaaaggttgtaccgtgccagca
cagttctatattcacgaggccgatccggccgccacagaggtattgtgtaaaactcttggt
ctgccgcgctttattgccgcgactttggtcgcacgaggcatctcgtcgccgcaggaagcg
ggggagtttttgcgcccctcgctcgctcgcgattggggaaatccgtattgtatccccggt
atggacgaagtggttggcggcctcgaagcagcggtgcgcagcggtaaacgcattatggtg
tttggcgatttcgacctcgatggtatttcctctacggccgtgcttacgcgtgggttgcgt
gaactaggtggcgaggtcgttccctttattccgcgccgacaggatgaaggctacggcatt
actgaggctgctatcgaacgcttgatgaaggatgaacccgacctgctagtgacggtggac
tgcggtattgcctgccgcaatgaggttcgcttgctgaaaaaccgtggtgtcgatgtattt
attaccgaccaccatgaaccagccgatcttgttcctgaagaggtgccggtttgtgaccca
aaaattgatcctgactgttctgaatcgattttggcaggggtgggcgttgcgctaaagctc
attcaagcgcttggcgctcgctttggtcagccgcatctgtggcgtgaatacaccgactta
gcgacgctggggacgattgccgatcttatgccgatgcagcaggataatcgcgcgcttgtt
gccgatggggtagctcacatgaacgaatcgccccgtccatgcatcgctgctctcttacat
agtgccggggtagctgataagccggtgagctcaacttctctttctttttcggttattcct
cgcttgaatgccgcggggcgcatgggtgatgccatgttggctctcaatttgctgcttgaa
gacgacgctcatcgcgcacaggacattgccgccgatcttgaagcggtcaatagtcagcgt
cgcgcgattgaagctgaattggcagagattgcaaccctgcaagcacaagagatctatcag
gggcaacgagcgcttattgtagctggtgaaggatggcacgaaggggtgaagggcattgtc
gcgagccgccttgctcgttcatatggcgtgccaaccatcctgtttgccatcgacgaagaa
ggtattgcgcgcggcagcggccgcagcgtgggtagcgtcaatctttttaaagcagttgag
tcctgttccgacatgctcattcgttttggggggcatgaagcggcagtgggcgttacgctg
tcagcagccgacttgcctgcgttcaccaagcgcttgtgcgcctttatggacggtctcgat
aaaaattgtttccatccgcgtattgatattgatgcgtgcgtcaaccttgatgaactgacg
gttgaaaacgtcgaagcactcgaacagcttgccccctttggtcagggcaatcggcagccg
acgtatctggcgcaaaacgttatgctcacgcgcagtcgtgctgtgggcgcggataagaat
cacttttcgaccgtgctcaccgatggtgcgcataccgtatcgggcatcatgtttcattgc
gcctatatcgatcgcttaatgcactgcgatagcgtggtaaatgccggtttcgaggtgcag
gttgacgaatggcgcggtcgccgttcggtgaaggctatgctgtcatcgatatatcccgcg
cagccgtgtgtggccctagaaagcatgcttgatcctgaacagaagagctttgtttcagaa
ctgtatgcggcaagtgatgccgaactggtcgccgactgtgaggatgctcctgaagaagta
acccgtcttgatgctgaacgggaacaaaatcgccagcattgggagcaggttgccgcacaa
gatccgcagagcctgcgcgaggcagtggtacaggcactgattggcgatggagccctgttc
aactctcaaaagcagatattatcagcgctcgataacaacattgatacgcttgcggtaatg
gctaccgggcgtggcaagtcactgaccttccaggtacatgctgctacccgcgcgttggca
tcagggcaggcgagtttgtttgtctatccgctgcgggcactcattgctgatcaggcctat
catcttaatcacgcgcttcttccctttgggctgaatgccgaagtgcttaccggtgaatct
gcccccgaagaacgtcagcgcatctttgaagggcttgttcaaggtaccgttgatatcgtg
ctgacaaccccggagtttcttactattcacgccaatcgtcttgcgcaatccggtcgtatc
ggttttctcgttgtcgacgaggcgcatcatattggtcaggcacgtgcaggcaaccgtatg
gcgtatgcgtatattgatcgagcgattgcgcggctgggtaatccgtgtgttcttgcctta
accgcgacagcagatgctcagtgtgcgcaggcaatagaggaaacacttggttgccaccat
cgggtgcttgatcgtactgagcgcaagaatcttgttcttgacgaccagcgcaatctcaaa
cagagcgatccgtatctggccaaccttgtgtcacagggtgccaagatggttatctatgtc
aattcgcggcgtcattccgtggcattggcgcgcagtttgcgcaagcgagttccccagatg
gcaccctttattgggttctataacgcagggcttgcgcgtcccgatcgctgtcgtgtggaa
gaactatttcgcaccgggcaactgacagtactcgtgtcgacgtctgcctttggtgaaggg
gtaaatatccctgacattcgccatgtggtgctctaccatatgcctttcaatgaaatcgaa
tttaaccagatgagtgggcgagccggtcgtgatggaaaagaagcagtcgtgcacctgctg
tttagtgtaactgatgcgcgtatcaacgagggaattcttgctgatgcaacacccaaccac
gatacgcttgcgcaggtatatcgcgaactgaagcgcctttctgctgaggcggatggcagc
cccttacgtgtttccgatgctgatttagcgcagatatgcagcgatcgtcagcccgctttg
cgcatgtcacaggattctgttgcctgcgctatcgcggtatttcgtgaattgggcctggtg
gaaactgaggtttctgccacgcaaggtgaacatcgactgattcgcctaattgaagcgcat
ggcaacaaggcagagcttaccgatagtgtgcggtatcgtgaaggactcgacgagattgaa
atatttcgtaccttctgccactgggttggcagtgctacagcacccgttttgcaatcacgt
atcattcggcctatcttgcctgatgaaagtcaagaggaggtctag
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