Cupriavidus sp. USMAHM13: BKK81_30045
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Entry
BKK81_30045 CDS
T04762
Symbol
ligD
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
ccup
Cupriavidus sp. USMAHM13
Brite
KEGG Orthology (KO) [BR:
ccup00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
BKK81_30045 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ccup03400
]
BKK81_30045 (ligD)
Enzymes [BR:
ccup01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
BKK81_30045 (ligD)
DNA repair and recombination proteins [BR:
ccup03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
BKK81_30045 (ligD)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
AOZ04101
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All DBs
Position
2:complement(2691364..2693925)
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AA seq
853 aa
AA seq
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MQDALAPYRRRRDFRTTPEPRDEAAARPRRVAGRHGRALAFVVQKHAARRLHYDFRLELD
GTLKSWAVPKGPSLDPADKRMAVHVEDHPVDYAEFEGVIPPGQYGAGTVIVWDRGAWIPE
GDPRAAYRAGKLTFELRGEKLRGHWTLVRMHGNRQKDQDAWLLIKGRDEASVPITELDVV
EAMPDSVLSGAAGRAPRKGASARKSGKPKAAEDVPLPRGARAARLPLTLSPQLATLVETP
PADEQDWRYEIKFDGYRLLARIDGKGVRLFTREGNDWTSRLQAVARDVGALGLPDGWLDG
EIVVLGKHGETDFQALQNAFRTSSVDAIQYFVFDLPFYAGHDLRKVRLAQRRGLLRRLFE
RNTSPRLQFSEEFEAGPADMLDAACRMKLEGVIGKRADSHYVSARSKTWIKLKCTLRQEF
VIGGFTDPRGSRHGIGSLLLGVHASNGHLRYAGNVGTGFDERMLSTLRAKLDGLVTDTTP
FDAPPASLNVHWVRPKLVAEVSFGSWTRDGRVRHSVFHGLRSDKPASAVILEQPAEVPAG
PARPSHKHKHGHKPTAAGGRVAISHADRIVDQATGITKGELVRYYERVAPLMLPHLRDRP
VALVRAPDGVGGEQFFQRHGDTLRVDGIHVLDAGLWPGHPGLLEIVSAPALVAAAQLNAI
EFHTWNASKRSIGKPNRIVFDLDPGKGLSWAHMREGAAMVKALLDELGLVSFLKTSGGKG
LHVVVPVTPRAGWDEVKDFAHAVVMHIAQLIPQRFVAKRGAERRVGKIFIDYLRNGIGAT
TVAAFSVRARPGLGLSIPVGWDELESLESAAEWSVSNCGRRLEALASRDPWEAYARTRQS
ISRAAARLASAPG
NT seq
2562 nt
NT seq
+upstream
nt +downstream
nt
ctgcaggatgcgctcgcgccgtaccggcgccgacgggacttccggaccacgccggagccg
cgcgacgaggctgcggcacgcccgcgccgcgtcgccggcaggcatggcagagcgcttgcc
ttcgtggtccagaaacatgccgcgcgccgcctgcattacgacttccgcctcgaactggac
ggcacgctcaagagctgggccgttcccaaggggcccagcctcgatccggccgacaagcgc
atggcggtgcacgtggaagaccatccggtggactatgccgagttcgaaggcgtgattccg
cccggccaatatggcgcgggcaccgtcatcgtatgggatcgtggcgcgtggatcccggag
ggcgacccgcgtgcggcctatcgtgccgggaagctgacgttcgagctgcgcggggagaag
ctgcgcggccattggacgctggtccgcatgcacggcaacaggcagaaggaccaggatgca
tggctgctgatcaagggccgcgacgaagcctccgtgccgatcacggaactcgatgtggtg
gaagccatgccagacagtgtcctctccggagcggcagggcgagcgccgcgcaagggcgca
tcagcgcggaagtcaggcaagccgaaggcagcagaggacgtgcccctgcctcgcggcgcc
agggcggctcggttgccgctgacgctgtcgccacaactggcaacgctggtcgagacgcca
cccgccgatgagcaggactggcgctatgagatcaagttcgatgggtatcggctgctggcg
cggatcgacggcaagggcgtccgcctgttcacgcgcgagggcaacgattggacttccagg
ctgcaagcggtggcgcgcgacgtcggggcgctcggcttgcccgatggctggttggatggc
gagatcgtggtgttgggcaagcatggagagaccgatttccaggcgttgcagaacgccttc
aggacttcgtccgtcgatgccatccagtacttcgtcttcgacctgcccttctacgccggc
cacgacttgcgcaaggtgcgcctggcgcagcgccgcgggcttctcaggcggctcttcgaa
cgcaatacttcgccgcgcctgcaattcagcgaggaattcgaggctggcccggctgacatg
ctggacgcggcgtgccgcatgaagctggaaggcgtcatcggcaaacgcgccgattcgcac
tacgtcagcgcgcgcagcaagacatggatcaagctgaaatgcacgctgcggcaggagttc
gtgattggaggcttcaccgaccccaggggcagccggcacggtattggttccttgctgctg
ggcgtgcatgccagcaacgggcacctgcgctatgccggcaatgtcggcacgggtttcgac
gagcgcatgctcagtactttgcgcgccaagctggatgggctggtcactgacacgacacca
ttcgacgcgccgccggcatcgctgaacgtgcattgggtgcgcccgaaactggtggccgaa
gtttcgttcggttcgtggacgcgtgatgggcgggtgcggcattcggtttttcatggcctg
cgcagtgacaagcccgcatctgccgtcattctcgaacagcctgccgaggtccccgccggg
ccagcacggccttcacacaagcataagcacgggcacaagccgactgccgcgggcgggagg
gtcgccatcagccacgcggatcgcatcgtcgaccaagccacgggaatcaccaaaggagaa
ctcgtgcgctactacgagcgcgtggcgccgctgatgctgccgcacctgcgtgaccgtccg
gtcgccctggtgcgcgctcccgacggcgtgggcggcgagcagttcttccagcgccatggc
gacacgctgcgggtcgacggtatccatgttctggatgccggcctgtggccgggacatccg
ggattgctggagatcgtctcggcaccggcgctggtggcggctgcacagctcaatgcgatc
gagttccacacctggaatgccagcaaacgcagtatcggcaagcccaaccgtatcgtcttc
gacctggatcccggcaagggcttgtcctgggcgcatatgcgcgagggcgcggcgatggtg
aaggcgctgctcgatgaacttggactcgtcagcttcctcaagaccagcggaggcaagggg
ctgcatgtcgtggtaccggtgacgccgagggcaggctgggacgaggtgaaggacttcgcc
cacgccgtggtcatgcatatcgcccagctcatcccgcagcgctttgtcgccaaacgcggc
gctgagcggcgcgtcgggaagatctttatcgactacctgcgcaacggtatcggggctacc
accgtcgcggccttctcggtgcgtgcgcgccctggtctgggcctgtcgatacctgtaggc
tgggacgaactggaatcgttggagagcgccgcggagtggagcgtttccaactgtgggcgc
cggctggaagcgctggcatctcgtgatccatgggaagcctatgcccggacgcgccaatcc
atttcgcgcgctgcggcccggctggcaagcgcgcctgggtga
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