Citrobacter farmeri: CI104_20310
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Entry
CI104_20310 CDS
T05012
Symbol
recD
Name
(GenBank) exodeoxyribonuclease V subunit alpha
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
cfar
Citrobacter farmeri
Pathway
cfar03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
cfar00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
CI104_20310 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cfar03400
]
CI104_20310 (recD)
Enzymes [BR:
cfar01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
CI104_20310 (recD)
DNA repair and recombination proteins [BR:
cfar03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
CI104_20310 (recD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecD_N
AAA_19
AAA_30
Helicase_RecD
UvrD_C_2
Viral_helicase1
SH3_13
AAA_11
AAA_22
UvrD-helicase
SLFN-g3_helicase
AAA_16
nSTAND3
AAA_28
PhoH
DEAD
MukB
T2SSE
UvrD_C
CbiA
AAA_7
FtsK_SpoIIIE
DO-GTPase1
Motif
Other DBs
NCBI-ProteinID:
AST81260
LinkDB
All DBs
Position
complement(4078317..4080143)
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AA seq
608 aa
AA seq
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MTLQKRLLEAVEQKQLRPLDVQFALAVTGEHEPAVTLAAALLSRDAGEGHVCLPLARLAI
EADLPPLLAACLSEAGEPADWMECLLASDAVSRGERPSPMILHGDRLYLNRMWRNERTVA
CFFSEVNQPIAVDEALLTQTLEALFPTTDETNWQKVAAAVALTRRISVISGGPGTGKTTT
VARLLAALIQLAEGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPDDASTL
HRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIEALPPHGRVIFLGDRDQ
LASVEAGAVLGDICAWVNAGYTPERAQQLARLTGMPVPAGRDNEAATLRDSLCLLQKSYR
FGSDSGIGQLAAAINRGDKAAINGVFRQGFSDIDKRTLESSDDYAAMLEDALTGYGHYLT
LLQARAEPALIIQAFNEFQLLCALREGPFGVSGLNERIELAMQQKRKIHRLPHSRWYEGR
PVMIARNDSALGLFNGDIGVALDRGHGLRVWFAMPDGSIKSVQPSRLPEHETTWAMTVHK
SQGSEFDHAALVLPTQRTPVVTRELVYTAVTRARRRLSLYADERILGSAVATRTERRSGL
SMLFTEGL
NT seq
1827 nt
NT seq
+upstream
nt +downstream
nt
gtgacactacaaaagcgattgcttgaggccgtcgaacagaagcaactgcggcctctggat
gtgcaattcgcgctggcggtgaccggcgaacatgaacctgccgtcacgctggctgcggca
ttactcagccgggatgccggagaagggcacgtttgtttaccgctcgcccgactggcgata
gaggctgaccttccccctctgctggcagcctgcctgagtgaggcaggcgaaccggcggac
tggatggaatgcctgctcgcctcggatgccgtcagtcgtggagagcggccatcaccgatg
atcctccatggcgatcggctgtacctgaaccggatgtggcgcaacgaacgcacggtcgct
tgtttctttagcgaggtgaatcaacccatcgcggtggatgaagccttgctgacgcaaacg
ctggaagcgttgttcccgacgacagacgaaaccaactggcaaaaagttgccgctgcggtg
gcgctgacccgccgtatttcggtgatttccggcggaccaggaacggggaaaacaacgacc
gttgcgagactgctggcggcactgatccagctggcggaaggcgagcgttgccgtattcgc
ctggcggcacccacgggcaaagccgccgcgcgtctgacagagtccctgggcaaagcgctg
cgccagttgccgctgacggatgaacaaaagaaacgcatcccggatgatgccagcaccctg
caccgactattgggcgctcagcctggcagccagcgcttacgccatcacgcaggcaacccg
ctgcatctggatgtgctggtggtggatgaagcgtcgatgatcgacctgccgatgatgtcg
cgactgattgaggcgttaccgccgcacgggcgcgtcatttttctcggcgatcgcgatcag
ctcgcctcggttgaggcgggggcggtgttgggcgatatctgtgcctgggtgaacgcaggc
tatactccggaacgggcgcagcagttggctcgcctgacggggatgcccgttccggcaggt
agggacaacgaggccgccacgctgcgggacagtctctgtctgctgcaaaaaagctatcgc
tttggcagcgattccggcatcggacaactggctgcggcgatcaaccgtggcgataaggcc
gcgataaacggcgttttccggcagggcttcagtgatattgataaacggacgctggagagc
agtgacgattacgccgccatgcttgaagacgcgctgacaggttacgggcactacctgacg
ttgctccaggcgcgcgcggaacctgcgttaatcattcaggcgttcaatgaattccagctg
ctgtgcgcgctgcgtgaagggccgtttggcgtgagcgggctgaatgaacgcatcgaactg
gctatgcagcaaaagcgtaaaattcatcgtctgccccattcccgctggtatgaagggcga
cccgtaatgattgctcgtaacgacagcgcgctgggattgtttaacggcgatatcggcgtg
gcgctcgatcgtgggcacggattacgcgtctggtttgcgatgccggatggcagcattaag
tccgtgcagcccagtcgcctgccggagcatgaaacgacctgggcgatgacggtgcacaaa
tcgcagggctcggagttcgatcatgccgcgctggtgttacccacgcagcgtacgccggta
gtgacaagggaactggtgtataccgccgtgactcgcgcgcgtcgacgcctgtcgttgtat
gctgatgaacgtattcttggcagcgcggttgccacccgaactgagcgtcgcagtgggctg
tcgatgctgtttacagaagggctgtga
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