Collimonas fungivorans: CFU_4447
Help
Entry
CFU_4447 CDS
T01583
Symbol
trmE
Name
(GenBank) GTPase and tRNA-U34 5-formylation enzyme TrmE
KO
K03650
tRNA modification GTPase [EC:3.6.-.-]
Organism
cfu
Collimonas fungivorans
Brite
KEGG Orthology (KO) [BR:
cfu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
cfu03016
]
CFU_4447 (trmE)
Transfer RNA biogenesis [BR:
cfu03016
]
Eukaryotic type
tRNA modification factors
Other tRNA modification factors
CFU_4447 (trmE)
Prokaryotic type
Methyltransferases
CFU_4447 (trmE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MnmE_helical
TrmE_N
MMR_HSR1
FeoB_N
Dynamin_N
AIG1
RsgA_GTPase
Gtr1_RagA
Ras
Roc
MCM
MMR_HSR1_Xtn
Arf
AAA_16
Motif
Other DBs
NCBI-ProteinID:
AEK64268
UniProt:
G0AFU8
LinkDB
All DBs
Position
complement(5182299..5183696)
Genome browser
AA seq
465 aa
AA seq
DB search
MSFDSSPIAAIATAPGRGGIGVVRISGKQLGSLIEAVCGIAESKLTPRHATYLPFKNADG
SVIDQGLAIYFKAPHSYTGEDVLELQGHGGPVVLQMLLSRCLAAGQDIGLRMAEPGEFTQ
RAFINDKLDLAQAEAVADLIEASTEAAAKSASESLSGAFSKVIHALVGQVTNLRMLVEAT
LDFPEEEIDFLEKSDARGQLATIRSTLDNVFSQAAQGALLRDGLNIVLAGQPNVGKSSLL
NVLAGSDVAIVTPIAGTTRDKVTETIQLEGIPLNIIDTAGIREAEDANDEVERIGIERTW
AAVANADVILHMLDANHGPSLADEKIVARFPNSAPIIRIWNKIDQSGHKPAVDVMNDATH
IYLSATDHLGIDLLRTELLRIAGWQQTGESRYLARERHLIALKAARDHLEIADQHASLDN
RVNDQSLDLFAEELRLAQDRLSSITGAFTPDDLLGVIFSRFCIGK
NT seq
1398 nt
NT seq
+upstream
nt +downstream
nt
atgtctttcgattcctctcccattgccgccatcgccaccgcaccaggacgcggcggcatc
ggcgtagtccgtatttccggcaaacagctgggttcgctgattgaagctgtttgcggcatc
gcagagagcaagctgacgccacgccacgctacctacctgccgttcaagaatgccgacggc
agcgtcatcgaccaggggctggcgatctatttcaaggcgccgcattcctataccggtgaa
gacgtgctggagctgcaggggcatggcgggccggtggtgttgcagatgctgctcagccgc
tgcctggcggcgggacaggatatcggcttgcgcatggcagagccgggggaattcacgcag
cgggcgtttatcaatgacaagctggacctggcgcaggcggaagcagtggctgacctgatc
gaggcgtctaccgaggcggcagcaaaatcggcttcggaatcgctgtcgggggcgttttcc
aaagtgatccatgcgctggtagggcaggtcacgaacctccgcatgctggttgaagcgacg
ctggatttcccggaagaggaaatcgacttcctggaaaaatccgatgcgcgcggccagctg
gcgactatccgcagcacgctggacaatgtgttcagccaggccgcacagggcgctttgctg
cgcgatggcttgaacatcgtgctggcagggcagccgaatgtcggcaagtcgtccttgctg
aacgtgctggccggatccgatgtcgccatcgtcacgccgatcgccggcaccacccgcgac
aaggttaccgaaacgatccagctggaaggcatcccgctcaacatcatcgacaccgctggc
atccgcgaggcggaagacgccaacgacgaagtggaacggataggcatcgaacgcacctgg
gccgcggtggctaacgccgacgtgatcctgcacatgctggacgccaaccacggtccatcg
ctggccgatgaaaaaatcgtcgcccgtttcccgaacagcgcgccgatcatccgcatctgg
aacaagatcgaccagtccggccacaaacccgcggtcgatgtgatgaacgatgctacccat
atctatttgtcggcgaccgaccatctggggatcgatttgctgcgcacggaactgctgcgc
atcgccggctggcagcagaccggcgaatcgcgctacctggcgcgcgagcgtcacttgatc
gcactaaaggcagcgcgcgaccatctggagattgccgaccagcacgcctccctggacaac
cgggtcaacgatcagtcattggatctgtttgcggaagagttgcggctggcgcaggatcgg
cttagcagcattaccggggcgtttacgccggatgatttgctgggggtgattttttcgcgg
ttttgtattggaaagtag
DBGET
integrated database retrieval system
