Capra hircus (goat): 102174153
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Entry
102174153 CDS
T02910
Symbol
LIG1
Name
(RefSeq) DNA ligase 1 isoform X1
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
chx
Capra hircus (goat)
Pathway
chx03030
DNA replication
chx03410
Base excision repair
chx03420
Nucleotide excision repair
chx03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
chx00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
102174153 (LIG1)
03410 Base excision repair
102174153 (LIG1)
03420 Nucleotide excision repair
102174153 (LIG1)
03430 Mismatch repair
102174153 (LIG1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
chx03032
]
102174153 (LIG1)
03400 DNA repair and recombination proteins [BR:
chx03400
]
102174153 (LIG1)
Enzymes [BR:
chx01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
102174153 (LIG1)
6.5.1.6 DNA ligase (ATP or NAD+)
102174153 (LIG1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
102174153 (LIG1)
DNA replication proteins [BR:
chx03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
102174153 (LIG1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
102174153 (LIG1)
DNA repair and recombination proteins [BR:
chx03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
102174153 (LIG1)
NER (nucleotide excision repair)
Other NER factors
102174153 (LIG1)
MMR (mismatch excision repair)
Other MMR factors
102174153 (LIG1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
DDR
PucR
Motif
Other DBs
NCBI-GeneID:
102174153
NCBI-ProteinID:
XP_017918174
EnsemblRapid:
ENSCHIG00000025924
LinkDB
All DBs
Position
18:complement(55903284..55929693)
Genome browser
AA seq
914 aa
AA seq
DB search
MQRSIRSFFQPKKEGKVKKPEKETSNTIRETESPPKVALKERNRVVSDGDSPVKRPGRKA
TRVLGSEGEEEEEEAPTTPRSQEPASDSPQPSPPSPVTLPESSPSRSKPSPAAASPSGIP
KRRTARKQLPKRTFQDVLKEQGEDEDPETKKKKEEGEAETPTESLPEPEGGDKEEVGDQP
TTPPEPQTSTESPTESVSEPGVTVKQEPQEDGQAQPPPKAPKTLSSFFSPRKPAVKKEAK
EEGPGALRKDETKGHLDPPSYNPAKNNYHPIEDACWKAGQRVPYLAVARAFEKIEEVSAR
LRMVETLSNLLRSVVALSPADLLPVLYLSLNRLGPPQQGLELGIGEGILLKAVAQATGRQ
LESVRAEVAEKGDVGLVAESSRSTQRLVLPPPALTAAGVFAKFRDIAQLAGSASTTKKMD
VIKGLFVACRHSEARFIARALSGRLRLGLAEQSVLAALAQAVSLTPPGQECPPAVVDAGK
GKTAEARKTWLEEQGMILKQTFCEVPDLDRIVPVLLEHGLERLPEHCRLSPGVPLKPMLA
HPTRGVSEVLKRFEEAAFTCEYKYDGQRAQIHVLEGGEVKIFSRNQEDNTGRYPDIISRI
PKIKLPSVTSFILDTEAVAWDREKKQIQPFQVLTTRKRKEVDAAEIQVQVCLYAFDLIYL
NGESLVREPLSRRRQLLRENFVETEGEFVFATSLDTKDTEQIAEFLEQSVKDSCEGLMVK
TLDVDATYEIAKRSHNWLKLKKDYLEGVGDTLDLVVIGAYLGKGKRAGRYGGFLLASYDE
ESEEFQAICKLGTGFSDEELEEHHQRLQALVLPTPRSYVRADGAVAPDHWLDPSDVWEVK
CADLSLSPIYPAARGLVDSEKGISLRFPRFIRVREDKKPEQATTSAQVAGLYKKQSQIQN
QQGAEPDSEQEEFY
NT seq
2745 nt
NT seq
+upstream
nt +downstream
nt
atgcagcgaagcatcaggtcatttttccagcccaagaaagagggcaaagtgaagaagcca
gagaaggagacatccaacaccatcagagaaacggagtcccctccaaaggtggcactgaag
gagcggaatcgagtggtgtctgacggtgactctccagtgaagaggccggggaggaaggca
accagggtcctgggcagcgagggcgaggaggaggaagaggaagcccccaccacccccaga
agccaggagcctgcttcagactctccacagccctcacctcccagtcctgtcaccctgcct
gagagcagcccttcccgctccaagccctccccagcggctgcgtccccatcagggatcccg
aagcggcgcacggcccggaagcagcttcccaaacggacatttcaagatgtcctgaaagag
cagggcgaggacgaggacccagagactaagaagaagaaggaggaaggagaagcagagaca
ccaacagaaagcctcccagagcctgaagggggcgacaaggaggaagtgggggaccagccc
acgacgccccctgagccccagacctccacagagtccccgacagaaagcgtttcagagccc
ggggtgacggtgaagcaggaaccacaggaggatggccaggctcaaccgccccccaaagct
ccaaagaccctcagcagtttcttctccccccggaagccagctgtcaaaaaagaagcgaaa
gaagaaggacctggtgctctaagaaaggacgagaccaagggacacctggacccaccaagc
tacaatcctgccaagaacaactaccaccccatcgaggatgcctgctggaaggcgggccag
agggttccttatctggctgtggcccgggcattcgagaagatcgaggaggtctctgctcgg
ctccggatggtggagacgctgagcaacctgctgcgctccgtggtggccctgtcacctgct
gacctcctacccgtcctctacctcagcctcaaccgcctggggccgccccagcaggggctg
gagctcgggatcggagagggcatcctcctcaaggcagtggcccaggccacgggtcggcag
ctggagtccgtccgggccgaggtggccgagaagggtgatgtggggctggtggccgagagc
agccgcagcacccagaggctcgtgctgccccctcctgcgctcaccgccgccggcgtcttc
gccaagttccgggacatcgcgcagctggcgggcagcgcttccaccaccaagaagatggat
gtcatcaaaggcctctttgtggcctgccgtcactcagaggcgcgtttcattgccagagcc
ctgagtggacggctgcgcctcgggctggctgagcagtcggtgctggcggcccttgcccag
gccgtgagcctcacgccccccggtcaagaatgcccccccgccgtggtggacgccgggaag
ggcaagacggcagaagccagaaagacgtggctggaggagcagggcatgatcctgaagcag
accttctgtgaggtacctgacctggaccggatcgtccccgtgctgctggaacacggcctc
gagcggctcccggagcactgcaggctgagcccaggggttcccctgaaaccaatgttggcc
caccccacccggggtgtcagtgaggtcctgaagcgctttgaggaggcagctttcacctgc
gaatacaaatacgacgggcagagggcacagattcacgttctggaaggcggggaggtgaag
atcttcagcaggaatcaggaggacaatactggaaggtaccctgacatcatcagccgcatc
cccaagattaaactcccatcagtcacatccttcatcctagacacagaagctgtagcttgg
gaccgggaaaagaagcagatccagccattccaagtgctcaccacccgcaaacgcaaggag
gtggacgcagcagagatccaggtgcaggtgtgtctgtatgccttcgatctcatctacctc
aacggagagtccctggtacgtgagcccctctcccgacgccggcagctgctccgggagaac
ttcgtagagacggagggcgagttcgtctttgccacctccctggacaccaaggacacggag
cagatcgctgagttcctggagcagtcggtgaaagactcctgcgaggggctgatggtgaag
accctggacgtggatgccacctacgagatcgccaagaggtcacacaattggctcaagctg
aagaaggactacctcgagggtgtgggcgacaccctggacctcgtagtgattggtgcctac
ctgggcaaggggaaacgggccggccggtacggaggcttcctgctggcctcgtacgatgag
gagagcgaggagttccaggccatctgcaagctcggaactggcttcagtgacgaggagctg
gaagagcatcaccagaggctccaggccttagtgctgcccaccccgcgctcctatgtccgg
gctgacggtgcggtggcccctgaccactggctggaccccagcgacgtgtgggaggtgaag
tgcgcggacctctccctgtcccccatctaccctgcggcccggggcctggtggacagcgag
aaggggatctccctccgtttcccccggtttattcgtgtccgtgaggacaagaagccagag
caggccactactagtgcccaggtggccggtctgtacaagaagcagagtcagattcagaac
cagcagggtgctgagccggactccgagcaggaagagttctactag
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integrated database retrieval system