Chryseobacterium sp. IHB B 17019: ATE47_15865
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Entry
ATE47_15865 CDS
T04193
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
cih
Chryseobacterium sp. IHB B 17019
Pathway
cih03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cih00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ATE47_15865
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cih03021
]
ATE47_15865
03019 Messenger RNA biogenesis [BR:
cih03019
]
ATE47_15865
Transcription machinery [BR:
cih03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
ATE47_15865
Messenger RNA biogenesis [BR:
cih03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
ATE47_15865
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
NACHT
AAA_25
AAA_22
AAA
Rho_N
Motif
Other DBs
NCBI-ProteinID:
ALR31900
LinkDB
All DBs
Position
complement(3437322..3439151)
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AA seq
609 aa
AA seq
DB search
MFNIETLRSKSVTELAKILKDLGVKVARNSTENDKIFAILDFQASNPKVAKEYFNATETN
MNTEETPAEKPAKAPARKAAPKKTAARPKAETKAPTEERPQAEEKTEIEKISEDPKPEEI
KAEPLTTEETAASQAKKKRKRVSAPNTGNTEISQERTEAPKNTESQESAPAEEKPSNPQA
QARPQKGQHNNPHNNGNQHRNQNPNQNQNQNPNQNKQQQQQQHSERQEEHHEQKKEFSFD
GMVSIEGVLEILPDNYGFLRSSDFSYISSPDDVYVSTAQIRNFGLKTGDTVRGIVRLPKE
GEKYFSLLKPIEVNGRDLAFIKDRVAFEYLTPLFPEEKFNLAGKEATISTRVVDLFAPIG
KGQRAMIVAQPKTGKTMLLKDIANSIAANHPEVYMMVLLIDERPEEVTDMERSVNAEVIA
STFDEAADKHVKVANLVLAKAQRMVECGHDVVILLDSITRLARAYNTVTPASGKVLSGGV
DANALHKPKRFFGAARKIEGGGSLTIIATALIDTGSKMDEVIFEEFKGTGNMELQLDRKI
ANRRIYPAIDLVSSSTRRDDLLLDEVTSQRMWIFRKYLSEMNPVEAMEFVNKNIRGTLNN
EEFLMSMNK
NT seq
1830 nt
NT seq
+upstream
nt +downstream
nt
atgtttaacattgaaacgttaaggtcaaaatccgtaacggaactggctaaaatcttaaag
gatttgggcgttaaagttgcaagaaacagcactgaaaatgacaaaatctttgcaattctg
gactttcaggcttcaaatcccaaagtggcgaaagagtatttcaacgccaccgaaactaat
atgaatactgaagaaacaccagcagaaaaacctgcgaaggctcctgccagaaaggctgct
ccaaagaaaactgcagctagaccgaaagcagaaacaaaggctccgacagaagaaaggccc
caagccgaggaaaaaacagaaatagaaaaaatttctgaagatccaaaaccggaagaaata
aaagctgaaccgttaacaacagaggagacagcagcttcacaagctaagaaaaaaagaaaa
agggtatcagctcccaatacaggaaacacagaaatttcgcaagaaagaacagaagctcct
aaaaacacagaatctcaagaatctgctccagcagaagaaaagccaagcaatcctcaagct
caggccagacctcaaaaaggacaacacaacaatccgcacaacaacggaaaccagcataga
aatcaaaacccgaatcaaaaccaaaaccaaaacccgaatcagaataagcagcaacaacaa
cagcagcattctgaaagacaggaagagcatcatgaacagaaaaaagagttcagctttgac
ggaatggtaagtattgaaggagttttggaaattttacctgataactacggatttttacgt
tcatcagatttcagctatatctcttcaccggatgatgtgtatgtttctacagctcagatc
agaaatttcggtttgaaaaccggagatacggtaagaggaattgtaagacttccaaaagaa
ggcgaaaaatatttttctttattaaaaccaattgaagtaaacggacgtgatctggctttc
attaaagatcgtgttgcttttgaatatcttacaccacttttccctgaagaaaaattcaat
cttgcaggtaaagaggctacaatttctacaagagtggtcgatttattcgcaccgattggg
aaaggacagagagcaatgattgttgcccagccaaaaacgggtaaaacaatgttgctgaaa
gatattgctaattctatcgcagcaaaccaccctgaagtttatatgatggtacttttgatc
gacgaacgtccggaggaagttaccgatatggaaagaagtgtaaatgccgaagtaatcgca
tctacatttgatgaagcggcagataagcacgtaaaagttgcgaatcttgttttagcaaaa
gctcaaagaatggtggaatgcggacatgatgttgtaattttattagactcaattaccaga
ttggctagagcttacaatactgtaactcctgcatccggaaaggttttatcgggtggtgtt
gatgctaatgcacttcacaagccgaaaagattcttcggagcggcaagaaaaattgaaggt
ggcggatctttaacgattatcgctacggctcttattgatacaggttctaaaatggatgaa
gtgatctttgaagaattcaaaggtaccggaaacatggaacttcagttagatagaaaaatt
gccaacagaagaatttatcctgctattgatttggtgtcttcaagcacaagaagagacgat
ttattgctagatgaggttacttcccagagaatgtggatcttcagaaaatatctttctgaa
atgaatcctgtagaagccatggaatttgtaaataaaaacatcagaggaactttaaacaac
gaagaattcctgatgtctatgaataaataa
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