Ciona intestinalis (yellow sea squirt): 100170018
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Entry
100170018 CDS
T01056
Symbol
zf(bbox/ring)-3
Name
(RefSeq) E3 ubiquitin-protein ligase TRIM9
KO
K10649
tripartite motif-containing protein 9/67
Organism
cin
Ciona intestinalis (yellow sea squirt)
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cin04131
]
100170018 (zf(bbox/ring)-3)
04121 Ubiquitin system [BR:
cin04121
]
100170018 (zf(bbox/ring)-3)
Membrane trafficking [BR:
cin04131
]
Exocytosis
Calcium ion-dependent exocytosis
Others
100170018 (zf(bbox/ring)-3)
Ubiquitin system [BR:
cin04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
100170018 (zf(bbox/ring)-3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SPRY
zf-B_box
fn3
zf-C3HC4_4
zf-RING_UBOX
zf-C3HC4_3
Motif
Other DBs
NCBI-GeneID:
100170018
NCBI-ProteinID:
XP_002121804
Ensembl:
ENSCING00000025035
LinkDB
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Position
10:complement(60795..75605)
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AA seq
858 aa
AA seq
DB search
MEEELQCPVCHCIFNDPVILPCTHNVCFQCANTLIHKSGELKVDLPPAYNIETSFPHHEP
DKVSLLSETVLSDSDSGYSASSASSGTSDTPTPSSSTPTIVTSDPFSSLVPTHTVTQAST
TTTPTGVNLPALPDSISCLTCPICHRASFVDDRGVNGLPRNKAMNSIVGRYTRTIDSSLR
PPTLSPNASPVRKPPISPKKPATPVLRRHTKTVHNCQICEGDPANEASVKCLQCEVLYCA
SCRDRCHPPRGPLARHTLVDVDADKPEPTRRPAYPTLPNKPSLKNGVRLPSCSHHPTEKT
SLYCSSCHLPLCVLCQDEGRHKNHDLKPIGALYKSRKSQLSQQMGSLSSKARQAKDLVMS
LRGMPSEIEKSSTELESKTVTQLDHLMSLLQRKKDELLQKIAKERETKCKIVQDQLQQST
MKLRNTTGLLEYCIEVMKDNDPSAFLQVSQSLTERVSCNEQQWNGRNLISKTKPEFDMDI
VTSPLAMEIENLDFFQMKVPGKPSIRADECGARNNTVTLSWLPAPNSIVDSFRLEMDDGN
NGNYREVYAGKETVCTVDGLHFNSVYRARVRAVNKAGPSPHSDPLQLQTSEVASFQWDPT
QGHCDVRLSNNNCTVTSNSFDDRVVLGSVGFSRGIHYWEFSVDRYEGRPDPSFGVAFYDV
DKSQLLGKESRGWGMYIDESRSWLMHANEHSNRHEVGIKVGSRVGVLLDIARSLLSFYVD
GKPQGNPMTLPTSQGNYHPSGRKQALYFPAISVNRNVEVTLHTGLRSPIQPLQLYRNRMQ
ESSSYSGFSRIQKSPDCPHRGRNLSSSDLRLPSMEAKKFPPPPPIRRGGSTGNMSTRSDG
ESSDSTSAKSLRSFFHKK
NT seq
2577 nt
NT seq
+upstream
nt +downstream
nt
atggaggaagaactgcagtgtcctgtatgtcattgtatattcaatgatccagtgatatta
ccttgcacacataacgtatgtttccagtgtgctaatacattgatacacaagtctggtgag
ctgaaagttgatcttccacctgcgtacaacattgaaaccagttttccccaccacgaacca
gacaaagtcagtttattgagtgagactgtcctcagtgattcagatagcggttactcggct
tcgtcagcttcaagtgggacttccgacaccccgacaccctcaagttcgacgcctactatt
gtcaccagcgaccctttcagttcactcgtacccacgcacacagtgacgcaggcttctact
acaacaacaccaaccggtgtgaacttaccggcgttgccagattccatatcttgccttacg
tgtccgatttgccaccgagcgtcgttcgtggacgatagaggagtgaacggacttccacga
aacaaagctatgaactccatagttggaagatacacacgaaccattgacagcagtttacgc
ccaccaactttatctcccaacgcaagcccggttagaaaacctcccatctccccgaagaaa
cctgcgactcccgtattacgcagacacacaaagactgttcataattgtcagatatgcgag
ggcgatccagcgaacgaagcgagcgttaaatgccttcaatgcgaagtcctttactgcgca
tcatgtagagatagatgccatccaccccgtggacccttagcaaggcacacgctagtcgat
gtagacgctgataaaccagaaccaacccgacgccccgcctaccccactttacccaacaaa
ccaagcctcaaaaacggggtccgactcccatcttgctcccaccatcccaccgaaaagacg
agtttatattgttcgtcatgtcatcttcctctgtgtgtcctctgtcaggatgaaggaaga
cataagaaccacgatcttaaaccgattggagcgctttacaaatcccgcaagagtcagcta
agtcaacaaatgggttcgttatcaagtaaggctcgccaagctaaagacctcgtgatgtca
cttagagggatgccatctgagattgagaaatcttccactgaacttgaatcaaagacagtg
acgcaattggatcacttgatgtcgctgttacagcggaagaaagatgaacttcttcagaag
atcgcgaaagaacgcgaaacaaagtgtaaaatcgttcaagaccaacttcaacaatccaca
atgaagttacgaaacacaacaggattgttggaatattgtattgaagtcatgaaggacaac
gacccatctgcttttctacaggtgtcacaaagtttaaccgaacgcgtatcgtgcaacgaa
caacaatggaatggaagaaaccttatttcgaaaaccaaacccgaattcgatatggatatt
gtgacgtcaccattagccatggaaatcgagaaccttgacttcttccaaatgaaagttcca
ggcaaaccaagtatacgagccgacgaatgcggcgcaaggaacaacacagtaacattatct
tggcttcctgctcctaactccatcgttgatagcttcagacttgagatggatgatgggaac
aatggaaattatcgggaggtatacgctggcaaggaaactgtttgtaccgtggacggattg
cattttaacagcgtatacagagccagagtacgagctgtaaataaagctggaccaagtcca
catagcgaccctttgcaactacaaacatcggaagttgcaagcttccaatgggaccctact
caaggtcattgtgacgtcagattatcaaacaataactgcactgtgacgtcaaacagcttc
gacgatcgagtggtgctcggtagcgtcggcttttcaaggggaatacattattgggaattc
tccgtggatcgttatgaaggcaggcccgatccttcgtttggtgtggcgttttatgacgta
gataagagccaattgctaggtaaagagtcacgtggttgggggatgtatattgacgaatcg
aggagttggctcatgcacgctaatgaacattcaaacagacacgaagttggtataaaggtc
ggatcgagggttggcgttttacttgacatcgcaagaagcctgttgtcgttttacgtcgat
ggaaagccccaggggaatcccatgacgctacctacgtcacaggggaattaccatccatca
ggacgaaaacaagcgctgtattttcccgccattagcgtgaatagaaacgtggaggtgact
ctacacacaggattaagatctcccatccaacctcttcaactttaccggaacaggatgcaa
gaatcatcctcttactccgggttctctcgcatccagaagtccccggactgcccacaccga
ggtcggaacctcagctcctctgatcttcgcttgccatccatggaagcaaagaagtttcct
ccccctcctcccattagaagaggaggatcaacagggaacatgagcacgaggagtgatggg
gaatcctccgattcaacatcagctaaatctttgcgatctttcttccataaaaaataa
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